RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA825466" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

bioproject 1

  • PRJNA825466 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2095952 2095952 PRJNA825466_P_NODE_19982_length_248_cov_0.880000_g19881_i0 PRJNA825466 19982 248 0.88 2.1824 Mycoplasma cottewii 51364 Bacteria Bacteria 453 5.2600000000000005e-123   NTclustered gi|2294785939|gb|CP103424.1| 51364 g19881 i0 99.597 98.5725806451613 248 1 100 0 1 248 73454 73207 Mycoplasma cottewii strain VIS chromosome, complete genome blastn 24446 453 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma cottewii
6332223 6332223 PRJNA825466_P_NODE_23725_length_245_cov_0.895349_g23624_i0 PRJNA825466 23725 245 0.895349 2.19360505 Mycoplasmopsis 2767358 Bacteria Bacteria 453 5.1900000000000006e-123   NTclustered gi|2111402438|gb|CP068733.1| 28903 g23624 i0 100 100 245 0 100 0 1 245 3408 3652 Mycoplasmopsis bovis strain J81 chromosome, complete genome blastn 24500 453 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis bovis
11024184 11024184 PRJNA825466_P_NODE_6669_length_323_cov_1.232000_g6568_i0 PRJNA825466 6669 323 1.232 3.97936 Mycoplasma yeatsii 51365 Bacteria Bacteria 497 3.2399999999999993e-136   NTclustered gi|756767228|gb|CP007520.1| 743967 g6568 i0 94.444 27.7647058823529 324 16 100 2 1 323 136893 136571 Mycoplasma yeatsii GM274B blastn 8968 497 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma yeatsii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;