RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA825466", tax_kingdom = "Fusobacteriati" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 3 ✖

bioproject 1

  • PRJNA825466 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2095978 2095978 PRJNA825466_P_NODE_25682_length_243_cov_1.811765_g25581_i0 PRJNA825466 25682 243 1.811765 4.40258895 Ilyobacter insuetus 167643 Bacteria Bacteria 327 3.25e-85   NTclustered gi|15029009|emb|AJ307976.1| 167643 g25581 i0 90.947 256.111111111111 243 22 100 0 1 243 2881 2639 Ilyobacter insuetus 23S rRNA gene, strain DSM 6831 T blastn 62235 327 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Ilyobacter Ilyobacter insuetus
5056169 5056169 PRJNA825466_P_NODE_1424_length_579_cov_2.693676_g1327_i0 PRJNA825466 1424 579 2.693676 15.59638404 Fusobacteriaceae 203492 Bacteria Bacteria 575 2.74e-159   NTclustered gi|15029011|emb|AJ307978.1| 2333 g1327 i0 85.872 465.034542314335 545 71 94 6 8 550 1226 1766 Propionigenium modestum 23S rRNA gene, strain DSM 2376 T blastn 269255 580 0.991379310344828 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Propionigenium Propionigenium modestum
17805708 17805708 PRJNA825466_P_NODE_7694_length_310_cov_5.527426_g7593_i0 PRJNA825466 7694 310 5.527426 17.1350206 root 1 Root_unresolved Root_unresolved 479 1.1199999999999996e-130   NTclustered gi|2664542187|gb|PP234999.1| 849 g7593 i0 95.318 104.458064516129 299 9 96 1 5 303 452 745 Fusobacterium gonidiaformans strain Granada 16S ribosomal RNA gene, partial sequence blastn 32382 483 0.991718426501035 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium Fusobacterium gonidiaformans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;