RNAquarium Metadata Server
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contig_metadata

8 rows where bioproject = "PRJNA825466", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 8 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 8 ✖

bioproject 1

  • PRJNA825466 · 8 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3371289 3371289 PRJNA825466_P_NODE_28423_length_241_cov_0.916667_g28322_i0 PRJNA825466 28423 241 0.916667 2.20916747 Akkermansia muciniphila 239935 Bacteria Bacteria 446 8.519999999999999e-121   NTclustered gi|1805906055|gb|CP027004.1| 239935 g28322 i0 100 100 241 0 100 0 1 241 497342 497102 Akkermansia muciniphila strain EB-AMDK-28 chromosome, complete genome blastn 24100 446 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Akkermansiaceae Akkermansia Akkermansia muciniphila
27086155 27086155 PRJNA825466_P_NODE_10242_length_287_cov_0.827103_g10141_i0 PRJNA825466 10242 287 0.827103 2.37378561 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 45.1 0.00618   NR MEI6341235.1 2026799 g10141 i0 37.9 0.606271777003484 58 34 58.5 1 58 225 109 166 MEI6341235.1 permease prefix domain 1-containing protein [Verrucomicrobiota bacterium] diamond 174 45.1 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
27718253 27718253 PRJNA825466_P_NODE_4024_length_380_cov_1.788274_g3923_i0 PRJNA825466 4024 380 1.788274 6.7954412 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 59.7 1.81e-7   NR MEW6160311.1 2026799 g3923 i0 50.7 0.592105263157895 75 32 55.3 2 374 165 274 348 MEW6160311.1 HYR domain-containing protein [Verrucomicrobiota bacterium] diamond 225 59.7 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
28981021 28981021 PRJNA825466_P_NODE_9888_length_289_cov_1.370370_g9787_i0 PRJNA825466 9888 289 1.37037 3.9603693 Verrucomicrobiaceae bacterium 2026800 Bacteria Bacteria 88.6 2.37e-18   NR RYD71398.1 2026800 g9787 i0 46.4 0.8719723183391 84 45 87.2 0 286 35 119 202 RYD71398.1 MAG: hypothetical protein EOP84_24945, partial [Verrucomicrobiaceae bacterium] diamond 252 88.6 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae   Verrucomicrobiaceae bacterium
29675109 29675109 PRJNA825466_P_NODE_19690_length_248_cov_1.342857_g19589_i0 PRJNA825466 19690 248 1.342857 3.33028536 Verrucomicrobiota bacterium 2026799 Bacteria Bacteria 141 6.8399999999999995e-37   NR MBM3869833.1 2026799 g19589 i0 82.5 0.967741935483871 80 14 96.8 0 240 1 546 625 MBM3869833.1 hypothetical protein [Verrucomicrobiota bacterium] diamond 240 141 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium
30505514 30505514 PRJNA825466_P_NODE_1813_length_520_cov_2.612975_g1714_i0 PRJNA825466 1813 520 2.612975 13.58747 Pseudomonadati 3379134 Bacteria Bacteria 176 3.87e-50   NR WP_018970930.1 361055 g1714 i0 51.1 5.91923076923077 174 79 98.1 3 514 5 207 378 WP_018970930.1 glycoside hydrolase family 75 protein [Rubritalea marina] diamond 3078 176 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Rubritaleaceae Rubritalea Rubritalea marina
30528327 30528327 PRJNA825466_P_NODE_29813_length_222_cov_7.167785_g29712_i0 PRJNA825466 29813 222 7.167785 15.9124827 Opitutaceae bacterium 2006848 Bacteria Bacteria 42.4 0.0388   NR MBP6506442.1 2006848 g29712 i0 42.9 0.567567567567568 42 24 56.8 0 130 5 185 226 MBP6506442.1 alpha-galactosidase [Opitutaceae bacterium] diamond 126 42.4 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Opitutia Opitutales Opitutaceae   Opitutaceae bacterium
31611796 31611796 PRJNA825466_P_NODE_26136_length_243_cov_0.905882_g26035_i0 PRJNA825466 26136 243 0.905882 2.20129326 Pseudomonadati 3379134 Bacteria Bacteria 87 3.81e-18   NR MBS0626875.1 2026799 g26035 i0 63.8 1.97530864197531 80 23 98.8 3 3 242 51 124 MBS0626875.1 MFS transporter [Verrucomicrobiota bacterium] diamond 480 87 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota         Verrucomicrobiota bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;