RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA825466", tax_clade = "Metamonada" and tax_superkingdom = "Eukaryota"

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tax_phylum 2

tax_superkingdom 1

  • Eukaryota · 3 ✖

tax_clade 1

  • Metamonada · 3 ✖

bioproject 1

  • PRJNA825466 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5056167 5056167 PRJNA825466_P_NODE_11864_length_275_cov_2.950495_g11763_i0 PRJNA825466 11864 275 2.950495 8.11386125 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 105 9.92e-27   NR KAJ4458621.1 342808 g11763 i0 68.5 4.00363636363636 73 23 79.6 0 267 49 5 77 KAJ4458621.1 putative 40S ribosomal protein S16-1 [Paratrimastix pyriformis] diamond 1101 105 1 Eukaryota Metamonada   Preaxostyla     Paratrimastigidae Paratrimastix Paratrimastix pyriformis
27749683 27749683 PRJNA825466_P_NODE_4804_length_358_cov_1.066667_g4703_i0 PRJNA825466 4804 358 1.066667 3.81866786 Anaeramoeba ignava 1746090 Root_unresolved Root_unresolved 51.2 1.56e-4   NR KAJ5080669.1 1746090 g4703 i0 39 0.645251396648045 77 46 64.5 1 43 273 1883 1958 KAJ5080669.1 neurofibromin [Anaeramoeba ignava] diamond 231 51.2 1 Eukaryota Metamonada         Anaeramoebidae Anaeramoeba Anaeramoeba ignava
30054279 30054279 PRJNA825466_P_NODE_13371_length_267_cov_1.376289_g13270_i0 PRJNA825466 13371 267 1.376289 3.67469163 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 80.5 2.28e-17   NR XP_001580982.1 412133 g13270 i0 60.3 1.33707865168539 58 23 65.2 0 46 219 4 61 XP_001580982.1 translational elongation [Trichomonas vaginalis G3] diamond 357 80.5 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;