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contig_metadata

7 rows where bioproject = "PRJNA825466" and tax_clade = "Human papillomavirus types"

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tax_superkingdom 1

tax_phylum 1

tax_kingdom 1

tax_clade 1

  • Human papillomavirus types · 7 ✖

bioproject 1

  • PRJNA825466 · 7 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11431921 11431921 PRJNA825466_P_NODE_19329_length_249_cov_0.875000_g19228_i0 PRJNA825466 19329 249 0.875 2.17875 Alphapapillomavirus 333750 Viruses Viruses 403 5.3999999999999986e-108   NTclustered gi|403240877|gb|JX556666.1| 10566 g19228 i0 100 67.0441767068273 218 0 100 0 1 218 336 119 Human papillomavirus isolate cu577 E1 gene, partial cds blastn 16694 403 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
12707685 12707685 PRJNA825466_P_NODE_10570_length_284_cov_1.345972_g10469_i0 PRJNA825466 10570 284 1.345972 3.82256048 Alphapapillomavirus 333750 Viruses Viruses 525 1.2899999999999994e-144   NTclustered gi|184383|gb|M73258.1|HUMHPVME18 10566 g10469 i0 100 53.8978873239437 284 0 100 0 1 284 1752 1469 Human cellular DNA/Human papillomavirus proviral DNA blastn 15307 525 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
13981946 13981946 PRJNA825466_P_NODE_15591_length_254_cov_2.176796_g15490_i0 PRJNA825466 15591 254 2.176796 5.52906184 Alphapapillomavirus 333750 Viruses Viruses 470 5.37e-128   NTclustered gi|1162227483|gb|KY502175.1| 10566 g15490 i0 100 100 254 0 100 0 1 254 899 646 Human papillomavirus isolate HPV18 P1 icosahedral capsid protein L2 (L2) gene, partial cds blastn 25400 470 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
13981948 13981948 PRJNA825466_P_NODE_16071_length_252_cov_1.184358_g15970_i0 PRJNA825466 16071 252 1.184358 2.98458216 Alphapapillomavirus 333750 Viruses Viruses 460 3.2e-125   NTclustered gi|2416400472|gb|OP721191.1| 10566 g15970 i0 99.603 100 252 1 100 0 1 252 345 596 MAG: Human papillomavirus isolate LSIL26_seq1 genomic sequence blastn 25200 460 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
13981971 13981971 PRJNA825466_P_NODE_3611_length_395_cov_2.493789_g3510_i0 PRJNA825466 3611 395 2.493789 9.85046655 Alphapapillomavirus 333750 Viruses Viruses 730 0   NTclustered gi|1098813|gb|U34153.1|HPU34153 10566 g3510 i0 100 100 395 0 100 0 1 395 1354 960 Human papillomavirus type 16, isolate OR 5428, late minor capsid protein L2 (L2) gene, partial cds blastn 39500 730 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
20354518 20354518 PRJNA825466_P_NODE_456_length_970_cov_2.022297_g381_i0 PRJNA825466 456 970 2.022297 19.6162809 Alphapapillomavirus 333750 Viruses Viruses 1775 0   NTclustered gi|1162227033|gb|KY501965.1| 10566 g381 i0 99.691 100 970 3 100 0 1 970 377 1346 Human papillomavirus isolate HPV18 P1 replication protein E1 (E1) gene, partial cds blastn 97000 1786 0.993840985442329 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus
25454761 25454761 PRJNA825466_P_NODE_3340_length_407_cov_2.041916_g3239_i0 PRJNA825466 3340 407 2.041916 8.31059812 Alphapapillomavirus 333750 Viruses Viruses 752 0   NTclustered gi|2416400470|gb|OP721190.1| 10566 g3239 i0 100 100 407 0 100 0 1 407 538 944 MAG: Human papillomavirus isolate LSIL25_seq1 genomic sequence blastn 40700 752 1 Viruses Human papillomavirus types Shotokuvirae Cossaviricota Papovaviricetes Zurhausenvirales Papillomaviridae   Human papillomavirus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;