RNAquarium Metadata Server
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contig_metadata

7 rows where bioproject = "PRJNA825466", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 7 ✖

tax_clade 1

  • Amoebozoa · 7 ✖

bioproject 1

  • PRJNA825466 · 7 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
21222440 21222440 PRJNA825466_P_NODE_11777_length_276_cov_1.266010_g11676_i0 PRJNA825466 11777 276 1.26601 3.4941876 Acanthamoeba castellanii 5755 Discosea other_Eukaryota 136 7.48e-36   NR AFD36246.1 5755 g11676 i0 74.1 21.5326086956522 85 22 92.4 0 21 275 4 88 AFD36246.1 protein kinase C17 [Acanthamoeba castellanii] diamond 5943 136 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
22905657 22905657 PRJNA825466_P_NODE_14718_length_259_cov_2.220430_g14617_i0 PRJNA825466 14718 259 2.22043 5.7509137 Ripella 1217112 Discosea other_Eukaryota 409 1.22e-109   NTclustered gi|399764202|gb|JQ271713.1| 1217113 g14617 i0 100 85.8687258687259 221 0 85 0 39 259 228 448 Ripella sp. 805 18S ribosomal RNA gene, partial sequence blastn 22240 411 0.995133819951338 Eukaryota Amoebozoa   Discosea Flabellinia   Vannellidae Ripella Ripella sp. 805
23772869 23772869 PRJNA825466_P_NODE_29539_length_234_cov_2.254658_g29438_i0 PRJNA825466 29539 234 2.254658 5.27589972 Cochliopodium minus 313997 Discosea other_Eukaryota 292 1.13e-74   NTclustered gi|330902893|gb|JF298271.1| 313997 g29438 i0 90.179 94.3547008547009 224 22 96 0 4 227 878 1101 Cochliopodium minus clone 5202 actin gene, partial cds blastn 22079 292 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
29991314 29991314 PRJNA825466_P_NODE_10311_length_286_cov_1.281690_g10210_i0 PRJNA825466 10311 286 1.28169 3.6656334 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 125 5.209999999999999e-31   NR XP_004353034.1 1257118 g10210 i0 54.7 0.996503496503496 95 42 98.6 1 284 3 378 472 XP_004353034.1 ARM family protein [Acanthamoeba castellanii str. Neff] diamond 285 125 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31444931 31444931 PRJNA825466_P_NODE_15756_length_253_cov_2.866667_g15655_i0 PRJNA825466 15756 253 2.866667 7.25266751 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 87 4.51e-18   NR XP_004337416.1 1257118 g15655 i0 54.2 0.984189723320158 83 38 98.4 0 3 251 106 188 XP_004337416.1 Twinfilin, putative [Acanthamoeba castellanii str. Neff] diamond 249 87 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
31539937 31539937 PRJNA825466_P_NODE_17536_length_250_cov_0.870056_g17435_i0 PRJNA825466 17536 250 0.870056 2.17514 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 51.2 4.03e-5   NR XP_004334900.1 1257118 g17435 i0 46.9 0.768 64 34 76.8 0 198 7 93 156 XP_004334900.1 uncharacterized protein ACA1_095070 [Acanthamoeba castellanii str. Neff] diamond 192 51.2 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
32520817 32520817 PRJNA825466_P_NODE_16599_length_251_cov_0.865169_g16498_i0 PRJNA825466 16599 251 0.865169 2.17157419 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 154 2.97e-44   NR XP_004338972.1 1257118 g16498 i0 92.5 2.89243027888446 80 6 95.6 0 241 2 10 89 XP_004338972.1 adenine nucleotide translocator, putative [Acanthamoeba castellanii str. Neff] diamond 726 154 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;