RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA816527" and tax_clade = "PVC group"

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tax_superkingdom 1

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA816527 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29485759 29485759 PRJNA816527_P_NODE_14430_length_276_cov_1.517241_g14380_i0 PRJNA816527 14430 276 1.517241 4.18758516 Isosphaeraceae bacterium 2691532 Bacteria Bacteria 131 2.89e-33   NR HEV3165552.1 2691532 g14380 i0 67 1.96739130434783 91 30 98.9 0 3 275 97 187 HEV3165552.1 glycosyltransferase family 39 protein [Isosphaeraceae bacterium] diamond 543 131 1 Bacteria PVC group Pseudomonadati Planctomycetota Planctomycetia Isosphaerales Isosphaeraceae   Isosphaeraceae bacterium
32646347 32646347 PRJNA816527_P_NODE_14340_length_277_cov_1.509804_g14290_i0 PRJNA816527 14340 277 1.509804 4.18215708 Verrucomicrobiia bacterium 2499141 Bacteria Bacteria 44.3 0.0156   NR MCW5558122.1 2499141 g14290 i0 57.1 0.530685920577617 49 17 53.1 1 120 266 253 297 MCW5558122.1 hypothetical protein [Verrucomicrobiia bacterium] diamond 147 44.3 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia       Verrucomicrobiia bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;