RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA815356" and tax_phylum = "Chlamydiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA815356 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16121745 16121745 PRJNA815356_P_NODE_5453_length_308_cov_1.702128_g5290_i0 PRJNA815356 5453 308 1.702128 5.24255424 Neochlamydia hartmannellae 112235 Bacteria Bacteria 525 1.4099999999999995e-144   NTclustered gi|194594624|gb|EU662269.1| 112235 g5290 i0 97.411 169.535714285714 309 7 100 1 1 308 1114 806 Neochlamydia hartmannellae strain ATCC 50802 23S ribosomal RNA gene, partial sequence blastn 52217 525 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Neochlamydia Neochlamydia hartmannellae
24179554 24179554 PRJNA815356_P_NODE_8699_length_254_cov_1.381215_g8536_i0 PRJNA815356 8699 254 1.381215 3.5082861 Parachlamydia 83551 Bacteria Bacteria 324 4.43e-84   NTclustered gi|470491594|ref|NR_077046.1| 83552 g8536 i0 89.883 137.582677165354 257 18 100 7 1 254 788 1039 Parachlamydia acanthamoebae strain UV-7 23S ribosomal RNA gene, complete sequence blastn 34946 327 0.990825688073395 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae Parachlamydia Parachlamydia acanthamoebae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;