RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA815356" and tax_clade = "delta/epsilon subdivisions"

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tax_superkingdom 1

tax_clade 1

  • delta/epsilon subdivisions · 2 ✖

bioproject 1

  • PRJNA815356 · 2 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
8880921 8880921 PRJNA815356_P_NODE_11227_length_231_cov_2.962025_g11064_i0 PRJNA815356 11227 231 2.962025 6.84227775 root 1 Root_unresolved Root_unresolved 427 2.9399999999999998e-115   NTclustered gi|2264046149|gb|ON921937.1| 34034 g11064 i0 100 100 231 0 100 0 1 231 425 195 Uncultured delta proteobacterium clone S156 16S ribosomal RNA gene, partial sequence blastn 23100 427 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium
23771551 23771551 PRJNA815356_P_NODE_5579_length_305_cov_1.586207_g5416_i0 PRJNA815356 5579 305 1.586207 4.83793135 uncultured delta proteobacterium 34034 Bacteria Bacteria 289 1.99e-73   NTclustered gi|374854163|dbj|AP011765.1| 34034 g5416 i0 84.211 23.583606557377 304 41 98 6 1 300 13380 13680 Uncultured delta proteobacterium DNA, fosmid clone: JFF046_H12 blastn 7193 289 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       uncultured delta proteobacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;