RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA815356", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA815356 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3369925 3369925 PRJNA815356_P_NODE_11843_length_198_cov_4.416000_g11680_i0 PRJNA815356 11843 198 4.416 8.74368 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 219 1.6e-52   NTclustered gi|2874253978|emb|OY970303.1| 412054 g11680 i0 87.065 387.631313131313 201 17 100 8 1 198 8175978 8176172 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 76751 219 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
21221173 21221173 PRJNA815356_P_NODE_4737_length_325_cov_3.861111_g4574_i0 PRJNA815356 4737 325 3.861111 12.54861075 uncultured Gemmatimonadales bacterium 412054 Bacteria Bacteria 361 4.47e-95   NTclustered gi|2874253978|emb|OY970303.1| 412054 g4574 i0 87.539 99.8430769230769 321 28 98 6 1 319 1903425 1903735 MAG: uncultured Gemmatimonadales bacterium isolate MFD01275.bin.c.12 genome assembly, chromosome: 1 blastn 32449 361 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     uncultured Gemmatimonadales bacterium
25045500 25045500 PRJNA815356_P_NODE_9600_length_248_cov_1.702857_g9437_i0 PRJNA815356 9600 248 1.702857 4.22308536 Gemmatimonas groenlandica 2732249 Bacteria Bacteria 309 1.21e-79   NTclustered gi|1839994010|gb|CP053085.1| 2732249 g9437 i0 89.2 85.1290322580645 250 24 100 3 1 248 1103211 1102963 Gemmatimonas groenlandica strain TET16 chromosome, complete genome blastn 21112 309 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Gemmatimonas Gemmatimonas groenlandica

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;