RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA814235" and tax_phylum = "Euglenozoa"

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tax_superkingdom 1

tax_phylum 1

  • Euglenozoa · 3 ✖

tax_clade 1

bioproject 1

  • PRJNA814235 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
817689 817689 PRJNA814235_P_NODE_42761_length_292_cov_2.521569_g41369_i0 PRJNA814235 42761 292 2.521569 7.36298148 Trypanosoma melophagium 715481 Euglenozoa other_Eukaryota 56.5 0.002   NTclustered gi|2787699093|ref|XM_067330975.1| 715481 g41369 i0 96.97 0.113013698630137 33 1 11 0 26 58 3296 3328 Trypanosoma melophagium Protein kinase domain (LSM04_006983), partial mRNA blastn 33 56.5 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Trypanosoma Trypanosoma melophagium
2091005 2091005 PRJNA814235_P_NODE_116542_length_203_cov_1.891566_g115147_i0 PRJNA814235 116542 203 1.891566 3.83987898 Trachelomonas similis 253970 Euglenozoa other_Eukaryota 97.1 8.06e-16   NTclustered gi|596104373|gb|KC907642.1| 253970 g115147 i0 92.537 32.615763546798 67 5 33 0 1 67 922 988 Trachelomonas similis strain SAG 1283-14 alpha-tubulin (tubA) gene, partial cds blastn 6621 97.1 1 Eukaryota Discoba   Euglenozoa Euglenida Euglenales Euglenaceae Trachelomonas Trachelomonas similis
14844847 14844847 PRJNA814235_P_NODE_178532_length_153_cov_3.724138_g177137_i0 PRJNA814235 178532 153 3.724138 5.69793114 Leptomonas pyrrhocoris 157538 Euglenozoa other_Eukaryota 84.2 4.44e-12   NTclustered gi|1002433691|ref|XR_001548760.1| 157538 g177137 i0 96.078 8.25490196078431 51 2 33 0 26 76 1 51 Leptomonas pyrrhocoris 28S ribosomal RNA (LSU-zeta) rRNA blastn 1263 84.2 1 Eukaryota Discoba   Euglenozoa Kinetoplastea Trypanosomatida Trypanosomatidae Leptomonas Leptomonas pyrrhocoris

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;