contig_metadata
17 rows where bioproject = "PRJNA814235" and tax_clade = "delta/epsilon subdivisions"
This data as json, CSV (advanced)
| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1226471 | 1226471 | PRJNA814235_P_NODE_184481_length_151_cov_4.114035_g183086_i0 | PRJNA814235 | 184481 | 151 | 4.114035 | 6.21219285 | Bacillota | 1239 | Bacteria | Bacteria | 111 | 2e-20 | NTclustered | gi|2874253674|emb|OY969108.1| | 34034 | g183086 | i0 | 81.579 | 184.523178807947 | 152 | 13 | 91 | 4 | 4 | 141 | 1541568 | 1541718 | MAG: uncultured delta proteobacterium isolate MFD01828.bin.c.1 genome assembly, chromosome: 1 | blastn | 27863 | 111 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | uncultured delta proteobacterium | ||||||
| 2093689 | 2093689 | PRJNA814235_P_NODE_58302_length_249_cov_2.632075_g56908_i0 | PRJNA814235 | 58302 | 249 | 2.632075 | 6.55386675 | Persicimonas caeni | 2292766 | Bacteria | Bacteria | 169 | 2.1399999999999996e-37 | NTclustered | gi|1695542189|gb|CP041186.1| | 2292766 | g56908 | i0 | 79.253 | 3.92369477911647 | 241 | 38 | 95 | 9 | 1 | 237 | 7928360 | 7928592 | Persicimonas caeni strain YN101 chromosome | blastn | 977 | 169 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Bradymonadales | Bradymonadaceae | Persicimonas | Persicimonas caeni | |||
| 3367003 | 3367003 | PRJNA814235_P_NODE_15303_length_487_cov_40.164444_g14001_i0 | PRJNA814235 | 15303 | 487 | 40.164444 | 195.60084228 | uncultured delta proteobacterium HF0010_01J10 | 710820 | Bacteria | Bacteria | 414 | 5.26e-111 | NTclustered | gi|297180392|gb|GU474842.1| | 710820 | g14001 | i0 | 82.258 | 139.989733059548 | 496 | 72 | 100 | 13 | 1 | 487 | 14390 | 14878 | Uncultured delta proteobacterium HF0010_01J10 genomic sequence | blastn | 68175 | 414 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | uncultured delta proteobacterium HF0010_01J10 | ||||||
| 3367954 | 3367954 | PRJNA814235_P_NODE_195843_length_151_cov_1.000000_g194448_i0 | PRJNA814235 | 195843 | 151 | 1 | 1.51 | uncultured delta proteobacterium | 34034 | Bacteria | Bacteria | 237 | 3.17e-58 | NTclustered | gi|927353694|gb|KT322228.1| | 34034 | g194448 | i0 | 94.805 | 73.6225165562914 | 154 | 5 | 100 | 1 | 1 | 151 | 178 | 25 | Uncultured delta proteobacterium clone TGR_WLFZ-48 16S ribosomal RNA gene, partial sequence | blastn | 11117 | 237 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | uncultured delta proteobacterium | ||||||
| 9745499 | 9745499 | PRJNA814235_P_NODE_33648_length_329_cov_4.452055_g32260_i0 | PRJNA814235 | 33648 | 329 | 4.452055 | 14.64726095 | uncultured delta proteobacterium | 34034 | Bacteria | Bacteria | 544 | 4.1899999999999996e-150 | NTclustered | gi|339646456|gb|JN038845.1| | 34034 | g32260 | i0 | 96.636 | 99.0182370820669 | 327 | 11 | 99 | 0 | 1 | 327 | 1 | 327 | Uncultured delta proteobacterium clone P-R58 16S ribosomal RNA gene, partial sequence | blastn | 32577 | 544 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | uncultured delta proteobacterium | ||||||
| 23769653 | 23769653 | PRJNA814235_P_NODE_202319_length_150_cov_1.716814_g200924_i0 | PRJNA814235 | 202319 | 150 | 1.716814 | 2.575221 | Bradymonas sediminis | 1548548 | Bacteria | Bacteria | 132 | 1.53e-26 | NTclustered | gi|1406952946|gb|CP030032.1| | 1548548 | g200924 | i0 | 90.099 | 3.62 | 101 | 10 | 67 | 0 | 1 | 101 | 3700264 | 3700364 | Bradymonas sediminis strain FA350 chromosome, complete genome | blastn | 543 | 132 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Bradymonadales | Bradymonadaceae | Bradymonas | Bradymonas sediminis | |||
| 26990827 | 26990827 | PRJNA814235_P_NODE_109962_length_203_cov_2.072289_g108567_i0 | PRJNA814235 | 109962 | 203 | 2.072289 | 4.20674667 | Deltaproteobacteria bacterium Smac51 | 2946587 | Bacteria | Bacteria | 56.2 | 3.77e-7 | NR | UQZ91181.1 | 2946587 | g108567 | i0 | 88 | 0.369458128078818 | 25 | 3 | 36.9 | 0 | 128 | 202 | 416 | 440 | UQZ91181.1 CoA-disulfide reductase [Deltaproteobacteria bacterium Smac51] | diamond | 75 | 56.2 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium Smac51 | ||||||
| 27220855 | 27220855 | PRJNA814235_P_NODE_100902_length_203_cov_2.403614_g99507_i0 | PRJNA814235 | 100902 | 203 | 2.403614 | 4.87933642 | Myxococcota | 2818505 | Bacteria | Bacteria | 46.6 | 9.63e-4 | NR | OQB11796.1 | 1852869 | g99507 | i0 | 83.3 | 2.82266009852217 | 24 | 4 | 35.5 | 0 | 130 | 201 | 322 | 345 | OQB11796.1 MAG: Outer membrane porin F precursor [Deltaproteobacteria bacterium ADurb.Bin207] | diamond | 573 | 46.6 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium ADurb.Bin207 | ||||||
| 27906932 | 27906932 | PRJNA814235_P_NODE_112525_length_203_cov_2.006024_g111130_i0 | PRJNA814235 | 112525 | 203 | 2.006024 | 4.07222872 | Deltaproteobacteria bacterium RBG_16_71_12 | 1797848 | Bacteria | Bacteria | 42 | 0.0423 | NR | OGQ24223.1 | 1797848 | g111130 | i0 | 76 | 0.369458128078818 | 25 | 6 | 36.9 | 0 | 203 | 129 | 793 | 817 | OGQ24223.1 MAG: hypothetical protein A2138_08225 [Deltaproteobacteria bacterium RBG_16_71_12] | diamond | 75 | 42 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium RBG_16_71_12 | ||||||
| 28380842 | 28380842 | PRJNA814235_P_NODE_196406_length_150_cov_5.008850_g195011_i0 | PRJNA814235 | 196406 | 150 | 5.00885 | 7.513275 | Microvenator marinus | 2600177 | Bacteria | Bacteria | 50.8 | 1.48e-5 | NR | WP_146961089.1 | 2600177 | g195011 | i0 | 74.1 | 0.54 | 27 | 7 | 54 | 0 | 67 | 147 | 193 | 219 | WP_146961089.1 MXAN_2562 family outer membrane beta-barrel protein [Microvenator marinus] | diamond | 81 | 50.8 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Bradymonadales | Microvenatoraceae | Microvenator | Microvenator marinus | |||
| 28421346 | 28421346 | PRJNA814235_P_NODE_201106_length_150_cov_2.734513_g199711_i0 | PRJNA814235 | 201106 | 150 | 2.734513 | 4.1017695 | Myxococcota | 2818505 | Bacteria | Bacteria | 45.4 | 0.0012 | NR | PKN58301.1 | 2013741 | g199711 | i0 | 69.2 | 1.04 | 26 | 8 | 52 | 0 | 150 | 73 | 525 | 550 | PKN58301.1 MAG: hypothetical protein CVU56_06570 [Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14] | diamond | 156 | 45.4 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 | ||||||
| 28515922 | 28515922 | PRJNA814235_P_NODE_117887_length_203_cov_1.843373_g116492_i0 | PRJNA814235 | 117887 | 203 | 1.843373 | 3.74204719 | Bacteria | 2 | Bacteria | Bacteria | 46.6 | 9.67e-4 | NR | OPL07327.1 | 1775671 | g116492 | i0 | 79.2 | 1.07881773399015 | 24 | 5 | 35.5 | 0 | 5 | 76 | 418 | 441 | OPL07327.1 MAG: hypothetical protein AVO33_06050, partial [delta proteobacterium ML8_F1] | diamond | 219 | 46.6 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | delta proteobacterium ML8_F1 | ||||||
| 28799774 | 28799774 | PRJNA814235_P_NODE_106287_length_203_cov_2.180723_g104892_i0 | PRJNA814235 | 106287 | 203 | 2.180723 | 4.42686769 | Chloroflexota | 200795 | Bacteria | Bacteria | 48.9 | 1.46e-4 | NR | OGP62842.1 | 1797826 | g104892 | i0 | 91.7 | 4.25615763546798 | 24 | 2 | 35.5 | 0 | 74 | 3 | 392 | 415 | OGP62842.1 MAG: potassium-transporting ATPase subunit KdpA [Deltaproteobacteria bacterium RBG_13_47_9] | diamond | 864 | 48.9 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium RBG_13_47_9 | ||||||
| 29936816 | 29936816 | PRJNA814235_P_NODE_96231_length_203_cov_2.668675_g94836_i0 | PRJNA814235 | 96231 | 203 | 2.668675 | 5.41741025 | Myxococcota | 2818505 | Bacteria | Bacteria | 48.5 | 1.97e-4 | NR | SBW09278.1 | 34034 | g94836 | i0 | 92 | 0.738916256157635 | 25 | 2 | 36.9 | 0 | 202 | 128 | 180 | 204 | SBW09278.1 exported hypothetical protein [uncultured delta proteobacterium] | diamond | 150 | 48.5 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | uncultured delta proteobacterium | ||||||
| 31128301 | 31128301 | PRJNA814235_P_NODE_197155_length_150_cov_4.132743_g195760_i0 | PRJNA814235 | 197155 | 150 | 4.132743 | 6.1991145 | Microvenator marinus | 2600177 | Bacteria | Bacteria | 50.8 | 1.41e-5 | NR | WP_249756198.1 | 2600177 | g195760 | i0 | 84 | 0.5 | 25 | 4 | 50 | 0 | 77 | 3 | 100 | 124 | WP_249756198.1 pyridoxal phosphate-dependent aminotransferase [Microvenator marinus] | diamond | 75 | 50.8 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Bradymonadales | Microvenatoraceae | Microvenator | Microvenator marinus | |||
| 32457433 | 32457433 | PRJNA814235_P_NODE_90659_length_203_cov_3.283133_g89264_i0 | PRJNA814235 | 90659 | 203 | 3.283133 | 6.66475999 | Microvenator marinus | 2600177 | Bacteria | Bacteria | 52.4 | 8.69e-6 | NR | WP_146958609.1 | 2600177 | g89264 | i0 | 95.8 | 0.354679802955665 | 24 | 1 | 35.5 | 0 | 201 | 130 | 159 | 182 | WP_146958609.1 serine/threonine protein kinase [Microvenator marinus] | diamond | 72 | 52.4 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Bradymonadales | Microvenatoraceae | Microvenator | Microvenator marinus | |||
| 32615172 | 32615172 | PRJNA814235_P_NODE_114920_length_203_cov_1.939759_g113525_i0 | PRJNA814235 | 114920 | 203 | 1.939759 | 3.93771077 | Deltaproteobacteria bacterium ADurb.Bin2 | 2026735 | Bacteria | Bacteria | 46.2 | 0.0013 | NR | OQB15032.1 | 1852869 | g113525 | i0 | 80 | 0.369458128078818 | 25 | 5 | 36.9 | 0 | 2 | 76 | 31 | 55 | OQB15032.1 MAG: Sodium/hydrogen exchanger family protein [Deltaproteobacteria bacterium ADurb.Bin207] | diamond | 75 | 46.2 | 1 | Bacteria | delta/epsilon subdivisions | Deltaproteobacteria | Deltaproteobacteria bacterium ADurb.Bin207 |
Advanced export
JSON shape: default, array, newline-delimited
CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;