RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA814235", tax_clade = "FCB group" and tax_phylum = "Chlorobiota"

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tax_superkingdom 1

tax_phylum 1

  • Chlorobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA814235 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28642305 28642305 PRJNA814235_P_NODE_132367_length_192_cov_2.393548_g130972_i0 PRJNA814235 132367 192 2.393548 4.59561216 Pseudomonadati 3379134 Bacteria Bacteria 80.1 8.06e-16   NR MBV5330413.1 1095 g130972 i0 66.7 4.328125 57 19 89.1 0 190 20 301 357 MBV5330413.1 UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing) [Chlorobium sp.] diamond 831 80.1 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp.
29896598 29896598 PRJNA814235_P_NODE_97451_length_203_cov_2.584337_g96056_i0 PRJNA814235 97451 203 2.584337 5.24620411 Chlorobiota bacterium 2268192 Bacteria Bacteria 44.3 0.00633   NR NOX17788.1 2268192 g96056 i0 90 2.66009852216749 20 2 29.6 0 141 200 49 68 NOX17788.1 cadmium-translocating P-type ATPase [Chlorobiota bacterium] diamond 540 44.3 1 Bacteria FCB group Pseudomonadati Chlorobiota         Chlorobiota bacterium
32866960 32866960 PRJNA814235_P_NODE_103680_length_203_cov_2.283133_g102285_i0 PRJNA814235 103680 203 2.283133 4.63475999 Chlorobium sp. N1 2491138 Bacteria Bacteria 42.4 0.0306   NR WP_131358021.1 2491138 g102285 i0 72 0.369458128078818 25 7 36.9 0 128 202 111 135 WP_131358021.1 ATP-binding protein [Chlorobium sp. N1] diamond 75 42.4 1 Bacteria FCB group Pseudomonadati Chlorobiota Chlorobiia Chlorobiales Chlorobiaceae Chlorobium Chlorobium sp. N1

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;