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contig_metadata

20 rows where bioproject = "PRJNA813520" and tax_phylum = "Streptophyta"

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tax_superkingdom 1

tax_phylum 1

  • Streptophyta · 20 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA813520 · 20 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
815053 815053 PRJNA813520_S_NODE_2341_length_238_cov_5.732057_g2294_i0 PRJNA813520 2341 238 5.732057 13.64229566 Cucumis melo 3656 Plants Plants 56.5 0.002   NTclustered gi|733594520|emb|LN681835.1| 3656 g2294 i0 100 0.382352941176471 30 0 13 0 37 66 119592 119563 Cucumis melo genomic scaffold, anchoredscaffold00064 blastn 91 56.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Cucurbitales Cucurbitaceae Cucumis Cucumis melo
2090714 2090714 PRJNA813520_S_NODE_1022_length_346_cov_88.706625_g975_i0 PRJNA813520 1022 346 88.706625 306.9249225 Picea abies 3329 Plants Plants 60.2 1.96e-4   NTclustered gi|2835530393|dbj|LC777203.1| 3329 g975 i0 92.857 0.121387283236994 42 1 12 2 28 68 20 60 Picea abies Pa-Kumamoto-2022 PaMurJ mRNA for lipid II transferase, complete cds blastn 42 60.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
2500886 2500886 PRJNA813520_S_NODE_1502_length_295_cov_6.187970_g1455_i0 PRJNA813520 1502 295 6.18797 18.2545115 Eukaryota 2759 Plants Plants 52.8 0.027   NTclustered gi|1963662117|emb|LR861820.1| 4565 g1455 i0 100 0.284745762711864 28 0 9 0 4 31 6 33 Triticum aestivum mRNA for NB-LRR protein (Pm1 gene), cultivar Axminster, allele Pm1a blastn 84 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
3365903 3365903 PRJNA813520_S_NODE_263_length_624_cov_8.522689_g229_i0 PRJNA813520 263 624 8.522689 53.18157936 Arabidopsis thaliana 3702 Plants Plants 54.7 0.017   NTclustered gi|1862939915|emb|LR797790.1| 3702 g229 i0 96.875 0.153846153846154 32 1 5 0 423 454 7489738 7489769 Arabidopsis thaliana genome assembly, chromosome: 4 blastn 96 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Arabidopsis Arabidopsis thaliana
3365927 3365927 PRJNA813520_S_NODE_703_length_407_cov_9.230159_g656_i0 PRJNA813520 703 407 9.230159 37.56674713 Picea abies 3329 Plants Plants 54.7 0.011   NTclustered gi|2835530398|dbj|LC777204.1| 3329 g656 i0 100 0.14004914004914 29 0 7 0 379 407 57 29 Picea abies Pa-Kumamoto-2022 PaPbp mRNA for penicillin-binding protein, complete cds blastn 57 54.7 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
3777243 3777243 PRJNA813520_S_NODE_1023_length_346_cov_87.369085_g976_i0 PRJNA813520 1023 346 87.369085 302.2970341 root 1 Root_unresolved Root_unresolved 52.8 0.033   NTclustered gi|2835530364|dbj|LC777194.1| 3329 g976 i0 100 0.173410404624277 28 0 8 0 4 31 29 56 Picea abies Pa-Kumamoto-2022 PaMurA mRNA for UDP-N-acetylglucosamine1-carboxyvinyltransferase, complete cds blastn 60 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
3777251 3777251 PRJNA813520_S_NODE_623_length_428_cov_13.436090_g576_i0 PRJNA813520 623 428 13.43609 57.5064652 root 1 Root_unresolved Root_unresolved 52.8 0.041   NTclustered gi|2835530364|dbj|LC777194.1| 3329 g576 i0 100 0.130841121495327 28 0 7 0 398 425 56 29 Picea abies Pa-Kumamoto-2022 PaMurA mRNA for UDP-N-acetylglucosamine1-carboxyvinyltransferase, complete cds blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
5918382 5918382 PRJNA813520_S_NODE_2845_length_216_cov_159.251337_g2798_i0 PRJNA813520 2845 216 159.251337 343.98288792 Picea abies 3329 Plants Plants 56.5 0.001   NTclustered gi|2835530398|dbj|LC777204.1| 3329 g2798 i0 94.595 0.300925925925926 37 0 17 2 154 189 55 20 Picea abies Pa-Kumamoto-2022 PaPbp mRNA for penicillin-binding protein, complete cds blastn 65 56.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
7603476 7603476 PRJNA813520_S_NODE_2886_length_215_cov_29.177419_g2839_i0 PRJNA813520 2886 215 29.177419 62.73145085 Eukaryota 2759 Plants Plants 52.8 0.019   NTclustered gi|2835530366|dbj|LC777195.1| 3329 g2839 i0 100 0.911627906976744 28 0 13 0 4 31 28 55 Picea abies Pa-Kumamoto-2022 PaMurB mRNA for UDP-N-acetylmuramate dehydrogenase, complete cds blastn 196 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
8468036 8468036 PRJNA813520_S_NODE_7_length_2527_cov_36.901521_g6_i0 PRJNA813520 7 2527 36.901521 932.50143567 Picea abies 3329 Plants Plants 60.2 0.002   NTclustered gi|2835530393|dbj|LC777203.1| 3329 g6 i0 91.304 0.0182034032449545 46 0 2 4 28 70 20 64 Picea abies Pa-Kumamoto-2022 PaMurJ mRNA for lipid II transferase, complete cds blastn 46 60.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
8878506 8878506 PRJNA813520_S_NODE_4227_length_177_cov_19.587838_g4180_i0 PRJNA813520 4227 177 19.587838 34.67047326 root 1 Root_unresolved Root_unresolved 52.8 0.015   NTclustered gi|2835530364|dbj|LC777194.1| 3329 g4180 i0 100 0.31638418079096 28 0 16 0 4 31 29 56 Picea abies Pa-Kumamoto-2022 PaMurA mRNA for UDP-N-acetylglucosamine1-carboxyvinyltransferase, complete cds blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
10153962 10153962 PRJNA813520_S_NODE_3408_length_198_cov_8.887574_g3361_i0 PRJNA813520 3408 198 8.887574 17.59739652 root 1 Root_unresolved Root_unresolved 52.8 0.017   NTclustered gi|2835530370|dbj|LC777197.1| 3329 g3361 i0 100 0.707070707070707 28 0 14 0 168 195 56 29 Picea abies Pa-Kumamoto-2022 PaMurD mRNA for UDP-MurNAc-L-alanyl-D-glutamate synthetase, complete cds blastn 140 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
13568658 13568658 PRJNA813520_S_NODE_391_length_526_cov_25.525151_g350_i0 PRJNA813520 391 526 25.525151 134.26229426 Jacobaea vulgaris 98722 Plants Plants 58.4 0.001   NTclustered gi|2918395481|emb|OZ238157.1| 98722 g350 i0 100 0.11787072243346 31 0 6 0 298 328 17123696 17123726 Jacobaea vulgaris genome assembly, chromosome: 9 blastn 62 58.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Asterales Asteraceae Jacobaea Jacobaea vulgaris
17393414 17393414 PRJNA813520_S_NODE_3114_length_207_cov_149.544944_g3067_i0 PRJNA813520 3114 207 149.544944 309.55803408 Picea abies 3329 Plants Plants 62.1 3.01e-5   NTclustered gi|2835530393|dbj|LC777203.1| 3329 g3067 i0 93.182 0.21256038647343 44 0 21 3 138 180 61 20 Picea abies Pa-Kumamoto-2022 PaMurJ mRNA for lipid II transferase, complete cds blastn 44 62.1 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
17393431 17393431 PRJNA813520_S_NODE_5254_length_158_cov_3.217054_g5207_i0 PRJNA813520 5254 158 3.217054 5.08294532 Brassica rapa 3711 Plants Plants 52.8 0.013   NTclustered gi|1516534800|emb|LR031575.1| 3711 g5207 i0 100 0.177215189873418 28 0 18 0 49 76 14587292 14587265 Brassica rapa genome, scaffold: A08 blastn 28 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Brassicales Brassicaceae Brassica Brassica rapa
18666492 18666492 PRJNA813520_S_NODE_115_length_921_cov_84.159193_g95_i0 PRJNA813520 115 921 84.159193 775.10616753 Picea abies 3329 Plants Plants 56.5 0.007   NTclustered gi|2835530393|dbj|LC777203.1| 3329 g95 i0 94.595 0.0401737242128122 37 0 4 2 859 894 55 20 Picea abies Pa-Kumamoto-2022 PaMurJ mRNA for lipid II transferase, complete cds blastn 37 56.5 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
21217147 21217147 PRJNA813520_S_NODE_177_length_751_cov_26.626039_g149_i0 PRJNA813520 177 751 26.626039 199.96155289 Malania oleifera 397392 Plants Plants 58.4 0.002   NTclustered gi|2532233495|ref|XR_009133862.1| 397392 g149 i0 94.595 0.0492676431424767 37 2 5 0 482 518 540 504 PREDICTED: Malania oleifera uncharacterized LOC131144648 (LOC131144648), ncRNA blastn 37 58.4 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Santalales Ximeniaceae Malania Malania oleifera
22491850 22491850 PRJNA813520_S_NODE_378_length_535_cov_62.292490_g337_i0 PRJNA813520 378 535 62.29249 333.2648215 Picea abies 3329 Plants Plants 60.2 3.14e-4   NTclustered gi|2835530393|dbj|LC777203.1| 3329 g337 i0 94.872 0.0728971962616822 39 0 7 2 28 65 20 57 Picea abies Pa-Kumamoto-2022 PaMurJ mRNA for lipid II transferase, complete cds blastn 39 60.2 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies
25452051 25452051 PRJNA813520_S_NODE_1840_length_268_cov_12.874477_g1793_i0 PRJNA813520 1840 268 12.874477 34.50359836 Eukaryota 2759 Plants Plants 52.8 0.025   NTclustered gi|1963662117|emb|LR861820.1| 4565 g1793 i0 100 0.313432835820896 28 0 10 0 238 265 33 6 Triticum aestivum mRNA for NB-LRR protein (Pm1 gene), cultivar Axminster, allele Pm1a blastn 84 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Magnoliopsida Poales Poaceae Triticum Triticum aestivum
25452056 25452056 PRJNA813520_S_NODE_520_length_467_cov_18.452055_g473_i0 PRJNA813520 520 467 18.452055 86.17109685 root 1 Root_unresolved Root_unresolved 52.8 0.045   NTclustered gi|2835530364|dbj|LC777194.1| 3329 g473 i0 100 0.119914346895075 28 0 6 0 437 464 56 29 Picea abies Pa-Kumamoto-2022 PaMurA mRNA for UDP-N-acetylglucosamine1-carboxyvinyltransferase, complete cds blastn 56 52.8 1 Eukaryota Embryophyta Viridiplantae Streptophyta Pinopsida Pinales Pinaceae Picea Picea abies

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;