RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

4 rows where bioproject = "PRJNA813520" and tax_phylum = "Mycoplasmatota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA813520 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3777246 3777246 PRJNA813520_S_NODE_183_length_748_cov_20.670376_g155_i0 PRJNA813520 183 748 20.670376 154.61441248 root 1 Root_unresolved Root_unresolved 54.7 0.021   NTclustered gi|2860285583|gb|CP174163.1| 2106 g155 i0 100 0.0775401069518717 29 0 4 0 161 189 335149 335177 Mycoplasma corogypsi strain BV1 chromosome, complete genome blastn 58 54.7 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma corogypsi
28854245 28854245 PRJNA813520_S_NODE_108_length_946_cov_13.726281_g88_i0 PRJNA813520 108 946 13.726281 129.85061826 Mycoplasma capricolum 2095 Bacteria Bacteria 50.1 0.00413   NR WP_052007440.1 2095 g88 i0 32.1 1.27484143763214 109 63 32.3 2 628 933 4 108 WP_052007440.1 hypothetical protein [Mycoplasma capricolum] diamond 1206 50.1 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma capricolum
30686108 30686108 PRJNA813520_S_NODE_853_length_373_cov_6.470930_g806_i0 PRJNA813520 853 373 6.47093 24.1365689 Metamycoplasma orale 2121 Bacteria Bacteria 44.3 0.0472   NR WP_022935917.1 2121 g806 i0 33 0.707774798927614 88 53 66 2 2 247 696 783 WP_022935917.1 DUF4011 domain-containing protein [Metamycoplasma orale] diamond 264 44.3 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Metamycoplasma Metamycoplasma orale
32615165 32615165 PRJNA813520_S_NODE_5460_length_155_cov_2.063492_g5413_i0 PRJNA813520 5460 155 2.063492 3.1984126 Mycoplasma wenyonii 65123 Bacteria Bacteria 47 3.56e-4   NR WP_112665019.1 65123 g5413 i0 95.2 0.406451612903226 21 1 40.6 0 63 1 1 21 WP_112665019.1 lysylphosphatidylglycerol synthase domain-containing protein [Mycoplasma wenyonii] diamond 63 47 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Mycoplasmatales Mycoplasmataceae Mycoplasma Mycoplasma wenyonii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;