RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA813520" and tax_phylum = "Basidiomycota"

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tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA813520 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
7603475 7603475 PRJNA813520_S_NODE_2846_length_216_cov_135.914439_g2799_i0 PRJNA813520 2846 216 135.914439 293.57518824 Opisthokonta 33154 Fungi Fungi 52.8 0.019   NTclustered gi|998623171|emb|LN999935.1| 5384 g2799 i0 100 0.277777777777778 28 0 13 0 154 181 29 2 Suillus luteus mRNA for Isocitrate lyase (ICL gene), isolate sp9 blastn 60 52.8 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Boletales Suillaceae Suillus Suillus luteus
22491825 22491825 PRJNA813520_S_NODE_1198_length_323_cov_88.428571_g1151_i0 PRJNA813520 1198 323 88.428571 285.62428433 Suillus luteus 5384 Fungi Fungi 54.7 0.008   NTclustered gi|998623171|emb|LN999935.1| 5384 g1151 i0 100 0.306501547987616 29 0 9 0 260 288 30 2 Suillus luteus mRNA for Isocitrate lyase (ICL gene), isolate sp9 blastn 99 54.7 1 Eukaryota Opisthokonta Fungi Basidiomycota Agaricomycetes Boletales Suillaceae Suillus Suillus luteus

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;