RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA813520" and tax_phylum = "Ascomycota"

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tax_superkingdom 1

tax_phylum 1

  • Ascomycota · 2 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA813520 · 2 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2500882 2500882 PRJNA813520_S_NODE_1082_length_337_cov_97.409091_g1035_i0 PRJNA813520 1082 337 97.409091 328.26863667 Ascomycota 4890 Fungi Fungi 514 3.37e-141   NTclustered gi|1473258532|gb|MH871476.1| 5046 g1035 i0 100 82.5044510385757 278 0 82 0 1 278 295 18 Sarocladium strictum culture CBS:376.70M strain CBS 376.70M large subunit ribosomal RNA gene, partial sequence blastn 27804 514 1 Eukaryota Opisthokonta Fungi Ascomycota Sordariomycetes Hypocreales Sarocladiaceae Sarocladium Sarocladium strictum
16528118 16528118 PRJNA813520_S_NODE_2833_length_217_cov_3.936170_g2786_i0 PRJNA813520 2833 217 3.93617 8.5414889 Sarocladium 284134 Fungi Fungi 401 1.6499999999999994e-107   NTclustered gi|157366947|gb|EU119045.1| 175243 g2786 i0 100 100 217 0 100 0 1 217 406 190 Uncultured ascomycete clone Biofilm3-16 small subunit ribosomal RNA gene, partial sequence blastn 21700 401 1 Eukaryota Opisthokonta Fungi Ascomycota         uncultured Ascomycota

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;