RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

12 rows where bioproject = "PRJNA812715" and tax_phylum = "Endomyxa"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Endomyxa · 12 ✖

tax_clade 1

bioproject 1

  • PRJNA812715 · 12 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16116994 16116994 PRJNA812715_P_NODE_78993_length_286_cov_1.446009_g77193_i0 PRJNA812715 78993 286 1.446009 4.13558574 root 1 Root_unresolved Root_unresolved 141 1.09e-40   NR CEP00879.1 37360 g77193 i0 83.3 59.2342657342657 78 13 81.8 0 238 5 22 99 CEP00879.1 hypothetical protein PBRA_008191 [Plasmodiophora brassicae] diamond 16941 141 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28042282 28042282 PRJNA812715_P_NODE_67365_length_313_cov_2.437500_g65565_i0 PRJNA812715 67365 313 2.4375 7.629375 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 146 1.12e-42   NR CEP02737.1 37360 g65565 i0 74.7 4.39936102236422 91 23 87.2 0 32 304 1 91 CEP02737.1 hypothetical protein PBRA_002705 [Plasmodiophora brassicae] diamond 1377 146 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28159986 28159986 PRJNA812715_P_NODE_82785_length_280_cov_1.367150_g80985_i0 PRJNA812715 82785 280 1.36715 3.82802 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 81.3 1.59e-15   NR CEP02772.1 37360 g80985 i0 42.5 0.932142857142857 87 50 93.2 0 3 263 494 580 CEP02772.1 hypothetical protein PBRA_002739 [Plasmodiophora brassicae] diamond 261 81.3 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28665062 28665062 PRJNA812715_P_NODE_87867_length_272_cov_1.356784_g86066_i0 PRJNA812715 87867 272 1.356784 3.69045248 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 73.9 7.42e-14   NR CEP03147.1 37360 g86066 i0 51.5 3.04411764705882 68 33 75 0 272 69 107 174 CEP03147.1 hypothetical protein PBRA_009365 [Plasmodiophora brassicae] diamond 828 73.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
28768356 28768356 PRJNA812715_P_NODE_71167_length_303_cov_1.673913_g69367_i0 PRJNA812715 71167 303 1.673913 5.07195639 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 49.7 2.4e-4   NR CEO94898.1 37360 g69367 i0 28.6 4.75247524752475 84 60 83.2 0 4 255 35 118 CEO94898.1 hypothetical protein PBRA_003711 [Plasmodiophora brassicae] diamond 1440 50.1 0.992015968063872 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29264656 29264656 PRJNA812715_P_NODE_117809_length_243_cov_0.905882_g116008_i0 PRJNA812715 117809 243 0.905882 2.20129326 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 80.9 1.41e-15   NR CEP00414.1 37360 g116008 i0 54.8 0.901234567901235 73 32 88.9 1 19 234 258 330 CEP00414.1 hypothetical protein PBRA_001468 [Plasmodiophora brassicae] diamond 219 80.9 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
29928157 29928157 PRJNA812715_P_NODE_76411_length_290_cov_1.419355_g74611_i0 PRJNA812715 76411 290 1.419355 4.1161295 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 51.2 6.57e-5   NR SPQ93230.1 37360 g74611 i0 48.1 1.11724137931034 54 25 54.8 2 40 198 159 210 SPQ93230.1 unnamed protein product [Plasmodiophora brassicae] diamond 324 51.2 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30022897 30022897 PRJNA812715_P_NODE_124311_length_227_cov_2.376623_g122510_i0 PRJNA812715 124311 227 2.376623 5.39493421 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 61.6 6.16e-9   NR CEP00712.1 37360 g122510 i0 59.5 0.555066079295154 42 17 55.5 0 101 226 207 248 CEP00712.1 hypothetical protein PBRA_001766 [Plasmodiophora brassicae] diamond 126 61.6 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30126058 30126058 PRJNA812715_P_NODE_29392_length_562_cov_2.065440_g27631_i0 PRJNA812715 29392 562 2.06544 11.6077728 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 191 4.4600000000000005e-58   NR CEP03653.1 37360 g27631 i0 52 8.33807829181495 175 84 93.4 0 525 1 4 178 CEP03653.1 hypothetical protein PBRA_003260 [Plasmodiophora brassicae] diamond 4686 191 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30244010 30244010 PRJNA812715_P_NODE_116152_length_244_cov_0.900585_g114351_i0 PRJNA812715 116152 244 0.900585 2.1974274 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 119 3.27e-29   NR SPR02116.1 37360 g114351 i0 74 3.72540983606557 77 20 94.7 0 5 235 3210 3286 SPR02116.1 unnamed protein product [Plasmodiophora brassicae] diamond 909 119 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
30339181 30339181 PRJNA812715_P_NODE_90212_length_268_cov_1.579487_g88411_i0 PRJNA812715 90212 268 1.579487 4.23302516 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 52.4 2.03e-5   NR CEO95889.1 37360 g88411 i0 51.9 0.582089552238806 52 22 58.2 1 156 1 234 282 CEO95889.1 hypothetical protein PBRA_009688, partial [Plasmodiophora brassicae] diamond 156 52.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae
31444788 31444788 PRJNA812715_P_NODE_51696_length_374_cov_1.109635_g49898_i0 PRJNA812715 51696 374 1.109635 4.1500349 Plasmodiophora brassicae 37360 SAR_Eukaryotes SAR_Eukaryotes 50.4 3.38e-4   NR CEO95712.1 37360 g49898 i0 32.3 2.18983957219251 96 58 74.6 4 17 295 802 893 CEO95712.1 hypothetical protein PBRA_004425 [Plasmodiophora brassicae] diamond 819 50.4 1 Eukaryota Sar   Endomyxa Phytomyxea Plasmodiophorida Plasmodiophoridae Plasmodiophora Plasmodiophora brassicae

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;