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contig_metadata

36 rows where bioproject = "PRJNA812715", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 36 ✖

tax_kingdom 1

  • Pseudomonadati · 36 ✖

bioproject 1

  • PRJNA812715 · 36 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
812723 812723 PRJNA812715_P_NODE_24581_length_647_cov_65.391986_g22874_i0 PRJNA812715 24581 647 65.391986 423.08614942 Arcobacter iocasae 2906515 Bacteria Bacteria 54.7 0.018   NTclustered gi|2809047151|gb|CP090177.1| 2906515 g22874 i0 100 0.044822256568779 29 0 4 0 97 125 1017122 1017150 Arcobacter sp. KX21116 chromosome, complete genome blastn 29 54.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter iocasae
3776836 3776836 PRJNA812715_P_NODE_46543_length_401_cov_2.387195_g44746_i0 PRJNA812715 46543 401 2.387195 9.57265195 Pseudomonadati 3379134 Bacteria Bacteria 721 0   NTclustered gi|972494020|gb|CP010483.1| 197 g44746 i0 99.007 85.428927680798 403 2 100 2 1 401 1633230 1633632 Campylobacter jejuni strain CJ677CC535, complete genome blastn 34257 721 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
13565688 13565688 PRJNA812715_P_NODE_116171_length_244_cov_0.900585_g114370_i0 PRJNA812715 116171 244 0.900585 2.1974274 Campylobacter concisus 199 Bacteria Bacteria 412 8.759999999999998e-111   NTclustered gi|1935888393|gb|CP049239.1| 199 g114370 i0 97.131 12.844262295082 244 7 100 0 1 244 591415 591658 Campylobacter concisus strain P3UCO1 chromosome, complete genome blastn 3134 412 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
16527654 16527654 PRJNA812715_P_NODE_32653_length_519_cov_25.006726_g30877_i0 PRJNA812715 32653 519 25.006726 129.78490794 root 1 Root_unresolved Root_unresolved 154 2.689999999999999e-41   NR WP_139546006.1 210 g30877 i0 59.3 5.02890173410405 145 59 83.8 0 5 439 196 340 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 2610 154 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
17802958 17802958 PRJNA812715_P_NODE_98774_length_255_cov_1.527473_g96973_i0 PRJNA812715 98774 255 1.527473 3.89505615 Aliarcobacter 2321111 Bacteria Bacteria 449 7.03e-122   NTclustered gi|1817415496|gb|CP026656.1| 28198 g96973 i0 98.431 49.8313725490196 255 4 100 0 1 255 1591014 1590760 Aliarcobacter cryaerophilus strain M830MA chromosome, complete genome blastn 12707 449 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Aliarcobacter Aliarcobacter cryaerophilus
18665172 18665172 PRJNA812715_P_NODE_55055_length_358_cov_1.621053_g53256_i0 PRJNA812715 55055 358 1.621053 5.80336974 Halarcobacter mediterraneus 2023153 Bacteria Bacteria 71.3 9.36e-8   NTclustered gi|2621784616|emb|OY781074.1| 2023153 g53256 i0 90.566 0.547486033519553 53 5 15 0 125 177 6388 6336 MAG: Halarcobacter mediterraneus isolate a5fc0a89-db13-449e-aec2-f9d0956b3340 genome assembly, chromosome: 1 blastn 196 71.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Halarcobacter Halarcobacter mediterraneus
22490051 22490051 PRJNA812715_P_NODE_40158_length_445_cov_11.190860_g38366_i0 PRJNA812715 40158 445 11.19086 49.799327 root 1 Root_unresolved Root_unresolved 189 4.4599999999999986e-55   NR WP_139546006.1 210 g38366 i0 66.9 5.98651685393258 148 49 99.8 0 2 445 96 243 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 2664 189 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
26651325 26651325 PRJNA812715_P_NODE_22121_length_703_cov_14.433333_g20451_i0 PRJNA812715 22121 703 14.433333 101.46633099 root 1 Root_unresolved Root_unresolved 238 1.99e-72   NR WP_139546006.1 210 g20451 i0 67.6 16.8477951635846 188 61 80.2 0 1 564 253 440 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 11844 238 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
26714561 26714561 PRJNA812715_P_NODE_37201_length_470_cov_25.508816_g35412_i0 PRJNA812715 37201 470 25.508816 119.8914352 root 1 Root_unresolved Root_unresolved 174 4.96e-49   NR WP_139546006.1 210 g35412 i0 62.2 10.9531914893617 156 59 99.6 0 469 2 262 417 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 5148 174 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27347742 27347742 PRJNA812715_P_NODE_36263_length_479_cov_12.204433_g34476_i0 PRJNA812715 36263 479 12.204433 58.45923407 root 1 Root_unresolved Root_unresolved 211 4.59e-63   NR WP_139546006.1 210 g34476 i0 67.7 83.7807933194155 158 51 99 0 479 6 236 393 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 40131 212 0.995283018867924 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27411005 27411005 PRJNA812715_P_NODE_42143_length_430_cov_13.703081_g40348_i0 PRJNA812715 42143 430 13.703081 58.9232483 root 1 Root_unresolved Root_unresolved 131 6.3e-33   NR WP_139546006.1 210 g40348 i0 63 7.53488372093023 108 40 75.3 0 5 328 303 410 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 3240 131 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
27537089 27537089 PRJNA812715_P_NODE_84803_length_277_cov_1.132353_g83003_i0 PRJNA812715 84803 277 1.132353 3.13661781 Bacteria 2 Bacteria Bacteria 65.1 5.46e-10   NR MRJ07222.1 2026809 g83003 i0 39.1 2.96750902527076 92 55 98.6 1 276 4 164 255 MRJ07222.1 SPFH domain-containing protein [Campylobacterota bacterium] diamond 822 65.1 1 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium
27884327 27884327 PRJNA812715_P_NODE_22245_length_700_cov_10.996810_g20572_i0 PRJNA812715 22245 700 10.99681 76.97767 root 1 Root_unresolved Root_unresolved 134 9.45e-33   NR WP_139546006.1 210 g20572 i0 54.5 4.11428571428571 145 66 62.1 0 2 436 162 306 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 2880 134 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28010881 28010881 PRJNA812715_P_NODE_78245_length_287_cov_1.682243_g76445_i0 PRJNA812715 78245 287 1.682243 4.82803741 root 1 Root_unresolved Root_unresolved 134 4.97e-35   NR WP_139546006.1 210 g76445 i0 65.3 9.93031358885017 95 33 99.3 0 3 287 294 388 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 2850 134 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28199900 28199900 PRJNA812715_P_NODE_95686_length_260_cov_1.026738_g93885_i0 PRJNA812715 95686 260 1.026738 2.6695188 root 1 Root_unresolved Root_unresolved 84.7 6.97e-17   NR WP_139546006.1 210 g93885 i0 75 3.87692307692308 56 14 64.6 0 4 171 421 476 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 1008 84.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28421326 28421326 PRJNA812715_P_NODE_46846_length_399_cov_13.518405_g45049_i0 PRJNA812715 46846 399 13.518405 53.93843595 root 1 Root_unresolved Root_unresolved 105 1.3299999999999995e-23   NR WP_139546006.1 210 g45049 i0 66.2 55.5488721804511 77 26 57.9 0 232 2 266 342 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 22164 105 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28736878 28736878 PRJNA812715_P_NODE_67367_length_313_cov_2.412500_g65567_i0 PRJNA812715 67367 313 2.4125 7.551125 root 1 Root_unresolved Root_unresolved 102 6.169999999999999e-23   NR WP_139546006.1 210 g65567 i0 53.8 5.98083067092652 104 48 99.7 0 313 2 169 272 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 1872 102 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
28958083 28958083 PRJNA812715_P_NODE_120028_length_241_cov_10.922619_g118227_i0 PRJNA812715 120028 241 10.922619 26.32351179 root 1 Root_unresolved Root_unresolved 108 1.36e-25   NR WP_139546006.1 210 g118227 i0 66.7 19.3195020746888 78 26 97.1 0 235 2 319 396 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 4656 108 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29052720 29052720 PRJNA812715_P_NODE_44948_length_411_cov_2.106509_g43152_i0 PRJNA812715 44948 411 2.106509 8.65775199 root 1 Root_unresolved Root_unresolved 115 4.89e-27   NR WP_139546006.1 210 g43152 i0 60.2 4.51094890510949 103 40 75.2 1 309 1 372 473 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 1854 115 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29242054 29242054 PRJNA812715_P_NODE_39689_length_449_cov_18.308511_g37897_i0 PRJNA812715 39689 449 18.308511 82.20521439 root 1 Root_unresolved Root_unresolved 163 4.9599999999999995e-45   NR WP_139546006.1 210 g37897 i0 61.1 5.97327394209354 149 58 99.6 0 447 1 95 243 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 2682 163 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29273420 29273420 PRJNA812715_P_NODE_96529_length_258_cov_2.264865_g94728_i0 PRJNA812715 96529 258 2.264865 5.8433517 Pseudomonadati 3379134 Bacteria Bacteria 41.2 0.0118   NR MEA2091798.1 2026809 g94728 i0 68.2 1.27906976744186 22 7 25.6 0 256 191 16 37 MEA2091798.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein [Campylobacterota bacterium] diamond 330 41.6 0.990384615384615 Bacteria   Pseudomonadati Campylobacterota         Campylobacterota bacterium
29526275 29526275 PRJNA812715_P_NODE_38370_length_460_cov_23.834625_g36580_i0 PRJNA812715 38370 460 23.834625 109.639275 root 1 Root_unresolved Root_unresolved 196 1.6299999999999997e-57   NR WP_139546006.1 210 g36580 i0 67.8 8.58913043478261 149 48 97.2 0 5 451 86 234 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 3951 196 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29526276 29526276 PRJNA812715_P_NODE_39690_length_449_cov_12.138298_g37898_i0 PRJNA812715 39690 449 12.138298 54.50095802 root 1 Root_unresolved Root_unresolved 132 2.09e-33   NR WP_139546006.1 210 g37898 i0 69.8 7.05567928730512 96 29 64.1 0 447 160 365 460 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 3168 132 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
29746947 29746947 PRJNA812715_P_NODE_103150_length_250_cov_1.740113_g101349_i0 PRJNA812715 103150 250 1.740113 4.3502825 root 1 Root_unresolved Root_unresolved 109 8.04e-26   NR WP_139546006.1 210 g101349 i0 67.5 10.56 80 26 96 0 246 7 354 433 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 2640 109 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30316386 30316386 PRJNA812715_P_NODE_31792_length_529_cov_9.850877_g30019_i0 PRJNA812715 31792 529 9.850877 52.11113933 root 1 Root_unresolved Root_unresolved 152 2.3299999999999993e-40   NR WP_139546006.1 210 g30019 i0 65.9 7.67296786389414 123 42 69.8 0 2 370 338 460 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 4059 152 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30537021 30537021 PRJNA812715_P_NODE_46693_length_400_cov_3.321101_g44896_i0 PRJNA812715 46693 400 3.321101 13.284404 root 1 Root_unresolved Root_unresolved 149 6.61e-40   NR WP_139546006.1 210 g44896 i0 61.4 5.94 132 51 99 0 398 3 141 272 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 2376 149 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
30916327 30916327 PRJNA812715_P_NODE_124374_length_226_cov_3.464052_g122573_i0 PRJNA812715 124374 226 3.464052 7.82875752 root 1 Root_unresolved Root_unresolved 97.4 1.2600000000000002e-21   NR WP_139546006.1 210 g122573 i0 64 10.9513274336283 75 27 99.6 0 225 1 336 410 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 2475 97.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31295356 31295356 PRJNA812715_P_NODE_61835_length_332_cov_1.351351_g60036_i0 PRJNA812715 61835 332 1.351351 4.48648532 root 1 Root_unresolved Root_unresolved 98.2 2.63e-21   NR WP_139546006.1 210 g60036 i0 51.9 5.85542168674699 108 52 97.6 0 4 327 224 331 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 1944 98.2 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31358799 31358799 PRJNA812715_P_NODE_82196_length_281_cov_1.264423_g80396_i0 PRJNA812715 82196 281 1.264423 3.55302863 root 1 Root_unresolved Root_unresolved 110 4.54e-26   NR WP_139546006.1 210 g80396 i0 70.2 5.38078291814947 84 25 89.7 0 2 253 160 243 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 1512 110 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31453690 31453690 PRJNA812715_P_NODE_124876_length_216_cov_3.426573_g123075_i0 PRJNA812715 124876 216 3.426573 7.40139768 root 1 Root_unresolved Root_unresolved 95.5 5.290000000000001e-21   NR WP_139546006.1 210 g123075 i0 64.8 9.86111111111111 71 25 98.6 0 215 3 336 406 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 2130 95.5 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31674810 31674810 PRJNA812715_P_NODE_122197_length_239_cov_3.271084_g120396_i0 PRJNA812715 122197 239 3.271084 7.81789076 root 1 Root_unresolved Root_unresolved 105 1.74e-24   NR WP_139546006.1 210 g120396 i0 65.8 10.907949790795 79 27 99.2 0 239 3 356 434 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 2607 105 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31706598 31706598 PRJNA812715_P_NODE_64557_length_322_cov_6.441767_g62757_i0 PRJNA812715 64557 322 6.441767 20.74248974 root 1 Root_unresolved Root_unresolved 81.6 1.92e-15   NR WP_139546006.1 210 g62757 i0 63.9 11.3664596273292 61 22 56.8 0 2 184 338 398 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 3660 81.6 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
31801284 31801284 PRJNA812715_P_NODE_65757_length_318_cov_7.126531_g63957_i0 PRJNA812715 65757 318 7.126531 22.66236858 root 1 Root_unresolved Root_unresolved 138 3.72e-36   NR WP_139546006.1 210 g63957 i0 64.8 9.90566037735849 105 37 99.1 0 2 316 303 407 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 3150 138 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32529400 32529400 PRJNA812715_P_NODE_124939_length_213_cov_4.850000_g123138_i0 PRJNA812715 124939 213 4.85 10.3305 root 1 Root_unresolved Root_unresolved 50.4 4.86e-5   NR WP_139546006.1 210 g123138 i0 65.8 5.88732394366197 38 13 53.5 0 100 213 131 168 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 1254 50.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori
32623734 32623734 PRJNA812715_P_NODE_64380_length_323_cov_1.540000_g62581_i0 PRJNA812715 64380 323 1.54 4.9742 Pseudomonadati 3379134 Bacteria Bacteria 54.3 6.36e-6   NR WP_123352584.1 1424653 g62581 i0 33 4.75541795665635 94 58 83.6 2 13 282 96 188 WP_123352584.1 protein kinase domain-containing protein [Caminibacter pacificus] diamond 1536 54.3 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Nautiliales Nautiliaceae Caminibacter Caminibacter pacificus
32718345 32718345 PRJNA812715_P_NODE_37700_length_466_cov_2.386768_g35911_i0 PRJNA812715 37700 466 2.386768 11.12233888 root 1 Root_unresolved Root_unresolved 114 1.78e-26   NR WP_139546006.1 210 g35911 i0 69.4 6.01931330472103 85 26 54.7 0 2 256 338 422 WP_139546006.1 hypothetical protein [Helicobacter pylori] diamond 2805 114 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;