RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

25 rows where bioproject = "PRJNA812715" and tax_kingdom = "Methanobacteriati"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_kingdom 1

  • Methanobacteriati · 25 ✖

bioproject 1

  • PRJNA812715 · 25 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4643367 4643367 PRJNA812715_P_NODE_9284_length_1348_cov_4.941961_g8305_i0 PRJNA812715 9284 1348 4.941961 66.61763428 Haloterrigena salinisoli 3132747 Archaea Archaea 56.5 0.011   NTclustered gi|2706837818|gb|CP149787.1| 3132747 g8305 i0 100 0.0459940652818991 30 0 2 0 568 597 2037648 2037619 Haloterrigena salinisoli strain KLK7 chromosome, complete genome blastn 62 56.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Haloterrigena Haloterrigena salinisoli
5052974 5052974 PRJNA812715_P_NODE_35344_length_489_cov_3.682692_g33559_i0 PRJNA812715 35344 489 3.682692 18.00836388 Halomicrobium 203135 Archaea Archaea 58.4 0.001   NTclustered gi|1622736797|gb|CP039375.1| 57705 g33559 i0 91.111 0.466257668711656 45 0 9 4 249 292 2847588 2847547 Halomicrobium mukohataei strain JP60 chromosome, complete genome blastn 228 58.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halomicrobium Halomicrobium mukohataei
5915245 5915245 PRJNA812715_P_NODE_108965_length_247_cov_1.770115_g107164_i0 PRJNA812715 108965 247 1.770115 4.37218405 Natronomonas moolapensis 416273 Archaea Archaea 296 9.34e-76   NTclustered gi|452081962|emb|HF582854.1| 268739 g107164 i0 88.259 1 247 29 100 0 1 247 2072968 2073214 Natronomonas moolapensis 8.8.11 complete genome blastn 247 296 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas moolapensis
7192707 7192707 PRJNA812715_P_NODE_80746_length_283_cov_1.466667_g78946_i0 PRJNA812715 80746 283 1.466667 4.15066761 Halomicrobium salinisoli 2878391 Archaea Archaea 156 1.93e-33   NTclustered gi|2110956525|gb|CP084463.1| 2878391 g78946 i0 87.05 2.0565371024735 139 16 49 2 146 283 2675634 2675497 Halomicrobium salinisoli strain LT50 chromosome, complete genome blastn 582 156 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloarculaceae Halomicrobium Halomicrobium salinisoli
9742684 9742684 PRJNA812715_P_NODE_84888_length_276_cov_6.384236_g83087_i0 PRJNA812715 84888 276 6.384236 17.62049136 Natrinema sp. SYSU A 869 2871694 Archaea Archaea 52.8 0.025   NTclustered gi|2089988103|gb|CP082249.1| 2871694 g83087 i0 100 0.101449275362319 28 0 10 0 124 151 290520 290493 Natrinema sp. SYSU A 869 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema sp. SYSU A 869
11429199 11429199 PRJNA812715_P_NODE_98169_length_256_cov_1.426230_g96368_i0 PRJNA812715 98169 256 1.42623 3.6511488 Haloferax 2251 Archaea Archaea 141 4.83e-29   NTclustered gi|4958988|gb|AF068743.1|AF068743 2246 g96368 i0 85.926 5.1953125 135 16 52 3 121 253 2550 2417 Haloferax volcanii pyruvate decarboxylase E1 alpha subunit (pdhA) and pyruvate decarboxylase E1 beta subunit (pdhB) genes, complete cds; and lipoate acetyl-transferase E2 (pdhC) gene, partial cds blastn 1330 141 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Haloferax Haloferax volcanii
12290939 12290939 PRJNA812715_P_NODE_101350_length_251_cov_1.730337_g99549_i0 PRJNA812715 101350 251 1.730337 4.34314587 Natrinema longum 370324 Archaea Archaea 52.8 0.023   NTclustered gi|2006040148|gb|CP071463.1| 370324 g99549 i0 96.875 0.127490039840637 32 0 13 1 68 99 299374 299344 Natrinema longum strain ABH32 chromosome, complete genome blastn 32 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natrinema Natrinema longum
12293624 12293624 PRJNA812715_P_NODE_76410_length_290_cov_1.419355_g74610_i0 PRJNA812715 76410 290 1.419355 4.1161295 Halorubrum sp. PV6 634157 Archaea Archaea 52.8 0.027   NTclustered gi|1540603140|gb|CP030064.1| 634157 g74610 i0 100 0.096551724137931 28 0 10 0 16 43 758802 758829 Halorubrum sp. PV6 chromosome, complete genome blastn 28 52.8 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum Halorubrum sp. PV6
19938949 19938949 PRJNA812715_P_NODE_125256_length_201_cov_4.906250_g123455_i0 PRJNA812715 125256 201 4.90625 9.8615625 Natronomonas moolapensis 416273 Archaea Archaea 209 9.8e-50   NTclustered gi|452081962|emb|HF582854.1| 268739 g123455 i0 85.93 28.452736318408 199 25 99 1 3 201 2630426 2630621 Natronomonas moolapensis 8.8.11 complete genome blastn 5719 209 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natronomonadaceae Natronomonas Natronomonas moolapensis
26642690 26642690 PRJNA812715_P_NODE_90961_length_267_cov_1.350515_g89160_i0 PRJNA812715 90961 267 1.350515 3.60587505 Halorubrum 56688 Archaea Archaea 174 5.69e-51   NR WP_053771994.1 56688 g89160 i0 95.5 0.98876404494382 88 4 98.9 0 266 3 288 375 WP_053771994.1 MULTISPECIES: ABC transporter ATP-binding protein [Halorubrum] diamond 264 174 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Haloferacaceae Halorubrum  
26778371 26778371 PRJNA812715_P_NODE_122221_length_239_cov_2.861446_g120420_i0 PRJNA812715 122221 239 2.861446 6.83885594 Candidatus Poseidonia 2599198 Archaea Archaea 139 2.17e-36   NR RJU90963.1 2163009 g120420 i0 87.3 1.98326359832636 79 10 99.2 0 2 238 340 418 RJU90963.1 MAG: ArsR family transcriptional regulator [Candidatus Poseidoniales archaeon] diamond 474 139 1 Archaea   Methanobacteriati Thermoplasmatota Candidatus Poseidoniia Candidatus Poseidoniales     Candidatus Poseidoniales archaeon
27884325 27884325 PRJNA812715_P_NODE_108125_length_248_cov_0.880000_g106324_i0 PRJNA812715 108125 248 0.88 2.1824 root 1 Root_unresolved Root_unresolved 41.2 0.0413   NR WP_214041426.1 90427 g106324 i0 34.9 2.26209677419355 63 34 76.2 1 18 206 28 83 WP_214041426.1 ferredoxin-thioredoxin reductase catalytic domain-containing protein [Methanoculleus sp.] diamond 561 41.6 0.990384615384615 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus sp.
27970275 27970275 PRJNA812715_P_NODE_73185_length_298_cov_1.168889_g71385_i0 PRJNA812715 73185 298 1.168889 3.48328922 Thermoplasmatota archaeon 2806419 Archaea Archaea 109 6.42e-27   NR MFO8052132.1 2806419 g71385 i0 61.3 0.805369127516778 80 31 80.5 0 256 17 2 81 MFO8052132.1 nucleoside monophosphate kinase [Thermoplasmatota archaeon] diamond 240 109 1 Archaea   Methanobacteriati Thermoplasmatota         Thermoplasmatota archaeon
28444097 28444097 PRJNA812715_P_NODE_90906_length_267_cov_1.515464_g89105_i0 PRJNA812715 90906 267 1.515464 4.04628888 Methanobacteriota archaeon 2026739 Archaea Archaea 121 8.479999999999998e-31   NR MBT60717.1 2026739 g89105 i0 63.2 0.97752808988764 87 31 97.8 1 266 6 167 252 MBT60717.1 aminotransferase [Methanobacteriota archaeon] diamond 261 121 1 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
29233401 29233401 PRJNA812715_P_NODE_57869_length_347_cov_0.843066_g56070_i0 PRJNA812715 57869 347 0.843066 2.92543902 Methanobacterium sp. 2164 Archaea Archaea 54.7 3.74e-6   NR MTK63112.1 2164 g56070 i0 51.8 0.93371757925072 56 27 48.4 0 2 169 137 192 MTK63112.1 hypothetical protein [Methanobacterium sp.] diamond 324 54.7 1 Archaea Methanomada group Methanobacteriati Methanobacteriota Methanobacteria Methanobacteriales Methanobacteriaceae Methanobacterium Methanobacterium sp.
29746956 29746956 PRJNA812715_P_NODE_72890_length_299_cov_0.845133_g71090_i0 PRJNA812715 72890 299 0.845133 2.52694767 root 1 Root_unresolved Root_unresolved 71.2 6.81e-12   NR MDD4455694.1 2517205 g71090 i0 58.5 1.06354515050167 53 22 53.2 0 297 139 409 461 MDD4455694.1 hypothetical protein [Candidatus Methanomethylophilaceae archaeon] diamond 318 71.2 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata Methanomassiliicoccales Methanomethylophilaceae   Candidatus Methanomethylophilaceae archaeon
30244002 30244002 PRJNA812715_P_NODE_102032_length_251_cov_0.865169_g100231_i0 PRJNA812715 102032 251 0.865169 2.17157419 Thermoplasmata archaeon 1906666 Archaea Archaea 78.2 1.09e-14   NR RLF35997.1 1906666 g100231 i0 52.4 1.51792828685259 63 30 75.3 0 221 33 1 63 RLF35997.1 MAG: ATPase, partial [Thermoplasmata archaeon] diamond 381 78.2 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
30505486 30505486 PRJNA812715_P_NODE_67773_length_312_cov_1.707113_g65973_i0 PRJNA812715 67773 312 1.707113 5.32619256 root 1 Root_unresolved Root_unresolved 134 3.85e-35   NR MCI4371872.1 1906666 g65973 i0 67 1.98076923076923 103 34 99 0 311 3 264 366 MCI4371872.1 IS110 family transposase [Thermoplasmata archaeon] diamond 618 134 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon
31034071 31034071 PRJNA812715_P_NODE_116035_length_244_cov_0.900585_g114234_i0 PRJNA812715 116035 244 0.900585 2.1974274 Halodesulfurarchaeum formicicum 1873524 Archaea Archaea 147 2.62e-41   NR WP_070365717.1 1873524 g114234 i0 90 0.983606557377049 80 8 98.4 0 242 3 18 97 WP_070365717.1 bile acid:sodium symporter family protein [Halodesulfurarchaeum formicicum] diamond 240 147 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halobacteriaceae Halodesulfurarchaeum Halodesulfurarchaeum formicicum
31105596 31105596 PRJNA812715_P_NODE_92995_length_264_cov_1.204188_g91194_i0 PRJNA812715 92995 264 1.204188 3.17905632 root 1 Root_unresolved Root_unresolved 94.4 3.47e-20   NR MBW3582536.1 2026739 g91194 i0 54.5 7 88 40 100 0 264 1 566 653 MBW3582536.1 AMP-binding protein [Methanobacteriota archaeon] diamond 1848 94.7 0.996832101372756 Archaea   Methanobacteriati Methanobacteriota         Methanobacteriota archaeon
31643163 31643163 PRJNA812715_P_NODE_61776_length_332_cov_1.783784_g59977_i0 PRJNA812715 61776 332 1.783784 5.92216288 Candidatus Methanoperedens 1392997 Archaea Archaea 107 2.52e-24   NR WP_096204125.1 1392998 g59977 i0 51.3 4.9789156626506 113 45 98.5 3 4 330 438 544 WP_096204125.1 glycine--tRNA ligase [Candidatus Methanoperedens nitroreducens] diamond 1653 108 0.990740740740741 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanosarcinales Candidatus Methanoperedentaceae Candidatus Methanoperedens Candidatus Methanoperedens nitratireducens
32362468 32362468 PRJNA812715_P_NODE_117499_length_243_cov_0.905882_g115698_i0 PRJNA812715 117499 243 0.905882 2.20129326 Natronosalvus caseinilyticus 2953747 Archaea Archaea 57.4 1.84e-8   NR WP_312911353.1 2953747 g115698 i0 82.9 0.432098765432099 35 6 43.2 0 139 243 1 35 WP_312911353.1 DUF4242 domain-containing protein [Natronosalvus caseinilyticus] diamond 105 57.4 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Natrialbaceae Natronosalvus Natronosalvus caseinilyticus
32457309 32457309 PRJNA812715_P_NODE_56319_length_353_cov_1.114286_g54520_i0 PRJNA812715 56319 353 1.114286 3.93342958 Methanoculleus horonobensis 528314 Archaea Archaea 43.5 0.0431   NR MDD3071884.1 528314 g54520 i0 31.6 0.484419263456091 57 37 46.7 1 79 243 117 173 MDD3071884.1 flavodoxin family protein [Methanoculleus horonobensis] diamond 171 43.5 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Methanomicrobia Methanomicrobiales Methanomicrobiaceae Methanoculleus Methanoculleus horonobensis
32835431 32835431 PRJNA812715_P_NODE_81320_length_282_cov_1.473684_g79520_i0 PRJNA812715 81320 282 1.473684 4.15578888 Halococcus saccharolyticus 62319 Archaea Archaea 62 1.07e-9   NR WP_006078351.1 62319 g79520 i0 62 0.531914893617021 50 19 53.2 0 1 150 89 138 WP_006078351.1 universal stress protein [Halococcus saccharolyticus] diamond 150 62 1 Archaea Stenosarchaea group Methanobacteriati Methanobacteriota Halobacteria Halobacteriales Halococcaceae Halococcus Halococcus saccharolyticus
32866919 32866919 PRJNA812715_P_NODE_18960_length_791_cov_2.541783_g17392_i0 PRJNA812715 18960 791 2.541783 20.10550353 Thermoplasmata archaeon 1906666 Archaea Archaea 52.8 9.76e-4   NR MDH3365664.1 1906666 g17392 i0 26.3 0.576485461441214 152 103 57.3 4 686 234 987 1130 MDH3365664.1 ABC transporter substrate-binding protein [Thermoplasmata archaeon] diamond 456 52.8 1 Archaea   Methanobacteriati Thermoplasmatota Thermoplasmata       Thermoplasmata archaeon

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;