RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA812715", tax_clade = "delta/epsilon subdivisions" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 3 ✖

tax_clade 1

  • delta/epsilon subdivisions · 3 ✖

bioproject 1

  • PRJNA812715 · 3 ✖

analysis 1

tax_phylum 0

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28263069 28263069 PRJNA812715_P_NODE_88406_length_271_cov_1.555556_g86605_i0 PRJNA812715 88406 271 1.555556 4.21555676 Bacteria 2 Bacteria Bacteria 45.4 0.00536   NR OGQ21875.1 1797862 g86605 i0 39.1 1.52767527675277 64 29 70.8 1 267 76 201 254 OGQ21875.1 MAG: hypothetical protein A3C46_01240 [Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_44_16] diamond 414 45.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium RIFCSPHIGHO2_02_FULL_44_16
30717731 30717731 PRJNA812715_P_NODE_60154_length_338_cov_1.894340_g58355_i0 PRJNA812715 60154 338 1.89434 6.4028692 Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_ 2026735 Bacteria Bacteria 57.4 7.25e-7   NR PIR17223.1 1973976 g58355 i0 51.3 1.1094674556213 39 19 34.6 0 240 124 316 354 PIR17223.1 MAG: hypothetical protein COV46_05190 [Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_49_13] diamond 375 57.4 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_49_13
31128233 31128233 PRJNA812715_P_NODE_74675_length_294_cov_1.248869_g72875_i0 PRJNA812715 74675 294 1.248869 3.67167486 SAR324 cluster bacterium 2024889 Bacteria Bacteria 53.1 6.01e-6   NR MED5342762.1 2024889 g72875 i0 33.8 3.10204081632653 77 50 77.6 1 229 2 94 170 MED5342762.1 hypothetical protein [SAR324 cluster bacterium] diamond 912 53.1 1 Bacteria delta/epsilon subdivisions     Deltaproteobacteria       SAR324 cluster bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;