RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA812715", tax_clade = "Metamonada" and tax_phylum = "Fornicata"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Fornicata · 2 ✖

tax_clade 1

  • Metamonada · 2 ✖

bioproject 1

  • PRJNA812715 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19941115 19941115 PRJNA812715_P_NODE_80196_length_284_cov_1.459716_g78396_i0 PRJNA812715 80196 284 1.459716 4.14559344 Carpediemonas membranifera 201153 Fornicata other_Eukaryota 134 4.5399999999999994e-35   NR KAG9395607.1 201153 g78396 i0 63.8 3.94014084507042 94 34 99.3 0 1 282 186 279 KAG9395607.1 Enolase [Carpediemonas membranifera] diamond 1119 134 1 Eukaryota Metamonada   Fornicata       Carpediemonas Carpediemonas membranifera
32615130 32615130 PRJNA812715_P_NODE_31320_length_535_cov_2.056277_g29551_i0 PRJNA812715 31320 535 2.056277 11.00108195 Giardia muris 5742 Fornicata other_Eukaryota 87.4 5.92e-17   NR TNJ30249.1 5742 g29551 i0 31.7 1.13271028037383 202 104 98.1 7 3 527 13 207 TNJ30249.1 Nucleotide-binding protein 35 [Giardia muris] diamond 606 87.4 1 Eukaryota Metamonada   Fornicata   Diplomonadida Hexamitidae Giardia Giardia muris

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;