RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA812715", tax_clade = "Bacteria candidate phyla" and tax_phylum = "Candidatus Sumerlaeota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Candidatus Sumerlaeota · 2 ✖

tax_clade 1

  • Bacteria candidate phyla · 2 ✖

bioproject 1

  • PRJNA812715 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27148708 27148708 PRJNA812715_P_NODE_69482_length_308_cov_1.310638_g67682_i0 PRJNA812715 69482 308 1.310638 4.03676504 Candidatus Sumerlaeota bacterium 2107588 Bacteria Bacteria 59.7 8.27e-8   NR MDK2971790.1 2107588 g67682 i0 62.5 1.46103896103896 48 16 44.8 1 307 170 341 388 MDK2971790.1 transport protein TqsA [Candidatus Sumerlaeota bacterium] diamond 450 59.7 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota         Candidatus Sumerlaeota bacterium
29075569 29075569 PRJNA812715_P_NODE_113748_length_245_cov_0.895349_g111947_i0 PRJNA812715 113748 245 0.895349 2.19360505 Candidatus Sumerlaeia bacterium 2715255 Bacteria Bacteria 53.1 8.02e-6   NR NUP91040.1 2715255 g111947 i0 42.2 2.19183673469388 64 31 71 1 243 70 144 207 NUP91040.1 succinylglutamate desuccinylase/aspartoacylase family protein [Candidatus Sumerlaeia bacterium] diamond 537 53.1 1 Bacteria Bacteria candidate phyla   Candidatus Sumerlaeota Candidatus Sumerlaeia       Candidatus Sumerlaeia bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;