RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA812001" and tax_phylum = "Nematoda"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Nematoda · 5 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA812001 · 5 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
810727 810727 PRJNA812001_P_NODE_41041_length_307_cov_4.004274_g40795_i0 PRJNA812001 41041 307 4.004274 12.29312118 Diploscapter pachys 2018661 Nematoda Nematoda 114 7.65e-31   NR PAV63004.1 2018661 g40795 i0 63 0.791530944625407 81 30 79.2 0 9 251 12 92 PAV63004.1 hypothetical protein WR25_03895 [Diploscapter pachys] diamond 243 114 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Rhabditidae Diploscapter Diploscapter pachys
3361651 3361651 PRJNA812001_P_NODE_4543_length_725_cov_36.337423_g4314_i0 PRJNA812001 4543 725 36.337423 263.44631675 Pratylenchus vulnus 45931 Nematoda Nematoda 56.5 0.006   NTclustered gi|1557394408|emb|LR031564.1| 45931 g4314 i0 97.059 0.0468965517241379 34 0 5 1 1 34 18 50 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 34 56.5 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
5913758 5913758 PRJNA812001_P_NODE_136605_length_230_cov_5.426752_g136359_i0 PRJNA812001 136605 230 5.426752 12.4815296 Pratylenchus vulnus 45931 Nematoda Nematoda 58.4 4.41e-4   NTclustered gi|1557394408|emb|LR031564.1| 45931 g136359 i0 94.737 0.295652173913043 38 0 16 2 1 37 18 54 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 68 58.4 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
8463952 8463952 PRJNA812001_P_NODE_68567_length_263_cov_6.636842_g68321_i0 PRJNA812001 68567 263 6.636842 17.45489446 Pratylenchus vulnus 45931 Nematoda Nematoda 52.8 0.024   NTclustered gi|1557394408|emb|LR031564.1| 45931 g68321 i0 100 0.106463878326996 28 0 11 0 236 263 50 23 Pratylenchus vulnus mRNA for endoglucanase-8 (Pv-eng-8 gene), clone Pv-eng-8-10 blastn 28 52.8 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Pratylenchidae Pratylenchus Pratylenchus vulnus
25036779 25036779 PRJNA812001_P_NODE_14600_length_423_cov_2.437143_g14354_i0 PRJNA812001 14600 423 2.437143 10.30911489 Koerneria sp. RS1982 358044 Nematoda Nematoda 228 6.309999999999998e-55   NTclustered gi|150984724|gb|EF634530.1| 358044 g14354 i0 79.13 11.7139479905437 345 61 80 9 85 423 748 409 Koerneria sp. RS1982 large subunit ribosomal protein 2 (rpl-2) mRNA, complete cds blastn 4955 228 1 Eukaryota Opisthokonta Metazoa Nematoda Chromadorea Rhabditida Neodiplogasteridae Koerneria Koerneria sp. RS1982

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;