contig_metadata
5 rows where bioproject = "PRJNA812001", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"
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| Link | rowid ▼ | query | bioproject | node | length | coverage | rel_abundance | taxname_lca | taxid_lca | taxoncategory | taxoncategorysimple | bits | evalue | lowcoverage_flag | analysis_used | target | taxid | gene | allele | pident | sumperc_cov | alnlen | mismatch | qcov | gapopen | qstart | qend | tstart | tend | target_title | analysis | sumalnlen | maxbits | bits_percmax | tax_superkingdom | tax_clade | tax_kingdom | tax_phylum | tax_class | tax_order | tax_family | tax_genus | tax_species |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5052573 | 5052573 | PRJNA812001_P_NODE_89984_length_249_cov_0.875000_g89738_i0 | PRJNA812001 | 89984 | 249 | 0.875 | 2.17875 | root | 1 | Root_unresolved | Root_unresolved | 459 | 1.1399999999999998e-124 | NTclustered | gi|2323232558|gb|CP109813.1| | 195 | g89738 | i0 | 100 | 113.542168674699 | 248 | 0 | 99 | 0 | 2 | 249 | 315732 | 315485 | Campylobacter coli strain CC20JX12 chromosome, complete genome | blastn | 28272 | 459 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Campylobacteraceae | Campylobacter | Campylobacter coli | ||
| 22487350 | 22487350 | PRJNA812001_P_NODE_25498_length_351_cov_44.143885_g25252_i0 | PRJNA812001 | 25498 | 351 | 44.143885 | 154.94503635 | Desulfurellales bacterium | 2482794 | Bacteria | Bacteria | 130 | 2.52e-32 | NR | TXH53568.1 | 2482794 | g25252 | i0 | 59.8 | 0.871794871794872 | 102 | 39 | 85.5 | 1 | 45 | 344 | 247 | 348 | TXH53568.1 MAG: hypothetical protein E6Q97_12950 [Desulfurellales bacterium] | diamond | 306 | 130 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Desulfurellia | Desulfurellales | Desulfurellales bacterium | ||||
| 29462691 | 29462691 | PRJNA812001_P_NODE_129450_length_242_cov_0.911243_g129204_i0 | PRJNA812001 | 129450 | 242 | 0.911243 | 2.20520806 | root | 1 | Root_unresolved | Root_unresolved | 52 | 8.52e-7 | NR | GAA8997938.1 | 210 | g129204 | i0 | 51 | 8.85123966942149 | 51 | 25 | 63.2 | 0 | 177 | 25 | 7 | 57 | GAA8997938.1 hypothetical protein Kyoto181A_6390 [Helicobacter pylori] | diamond | 2142 | 52 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Helicobacteraceae | Helicobacter | Helicobacter pylori | ||
| 30780955 | 30780955 | PRJNA812001_P_NODE_71914_length_259_cov_1.586022_g71668_i0 | PRJNA812001 | 71914 | 259 | 1.586022 | 4.10779698 | Helicobacter pylori | 210 | Bacteria | Bacteria | 72.8 | 5.19e-15 | NR | GAA8812112.1 | 210 | g71668 | i0 | 51.4 | 0.833976833976834 | 72 | 10 | 83.4 | 1 | 249 | 34 | 2 | 48 | GAA8812112.1 hypothetical protein Kyoto149A_3190 [Helicobacter pylori] | diamond | 216 | 72.8 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Helicobacteraceae | Helicobacter | Helicobacter pylori | ||
| 32615100 | 32615100 | PRJNA812001_P_NODE_51220_length_288_cov_0.953488_g50974_i0 | PRJNA812001 | 51220 | 288 | 0.953488 | 2.74604544 | Helicobacter pylori | 210 | Bacteria | Bacteria | 43.1 | 0.00437 | NR | GAA8930966.1 | 210 | g50974 | i0 | 51.1 | 0.916666666666667 | 45 | 15 | 39.6 | 2 | 134 | 21 | 2 | 46 | GAA8930966.1 hypothetical protein Kyoto166A_4300 [Helicobacter pylori] | diamond | 264 | 43.1 | 1 | Bacteria | Pseudomonadati | Campylobacterota | Epsilonproteobacteria | Campylobacterales | Helicobacteraceae | Helicobacter | Helicobacter pylori |
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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;