RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA812001", tax_kingdom = "Pararnavirae" and tax_superkingdom = "Viruses"

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tax_superkingdom 1

  • Viruses · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Pararnavirae · 2 ✖

bioproject 1

  • PRJNA812001 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
16112893 16112893 PRJNA812001_P_NODE_17253_length_398_cov_3.787692_g17007_i0 PRJNA812001 17253 398 3.787692 15.07501416 Gammaretrovirus murleu 3428959 Viruses Viruses 688 0   NTclustered gi|1167936820|gb|KY574514.1| 11786 g17007 i0 97.98 99.4346733668342 396 8 99 0 1 396 2123 1728 Murine leukemia virus isolate CB208, complete genome blastn 39575 688 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu
16113429 16113429 PRJNA812001_P_NODE_70913_length_260_cov_2.449198_g70667_i0 PRJNA812001 70913 260 2.449198 6.3679148 Gammaretrovirus murleu 3428959 Viruses Viruses 479 9.17e-131   NTclustered gi|66274552|dbj|AB213652.1| 11786 g70667 i0 100 98.9692307692308 259 0 99 0 1 259 3010 2752 Murine leukemia virus gag, env genes for gag polyprotein, env polyprotein, complete cds, clone: BXH2_S027 blastn 25732 479 1 Viruses   Pararnavirae Artverviricota Revtraviricetes Ortervirales Retroviridae Gammaretrovirus Gammaretrovirus murleu

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;