RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA812001", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA812001 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5052372 5052372 PRJNA812001_P_NODE_138004_length_199_cov_5.404762_g137758_i0 PRJNA812001 138004 199 5.404762 10.75547638 Mesomycoplasma 2923352 Bacteria Bacteria 368 1.51e-97   NTclustered gi|1958638472|gb|MW498281.1| 2100 g137758 i0 100 101 199 0 100 0 1 199 2464 2266 Mesomycoplasma hyorhinis strain MycSu21 23S ribosomal RNA gene, partial sequence blastn 20099 368 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
12703852 12703852 PRJNA812001_P_NODE_127410_length_242_cov_0.911243_g127164_i0 PRJNA812001 127410 242 0.911243 2.20520806 Mesomycoplasma 2923352 Bacteria Bacteria 448 2.3799999999999995e-121   NTclustered gi|2713084492|gb|CP150431.1| 2100 g127164 i0 100 16 242 0 100 0 1 242 373451 373692 Mesomycoplasma hyorhinis strain Nahrain chromosome blastn 3872 448 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
20350661 20350661 PRJNA812001_P_NODE_12336_length_453_cov_1.536842_g12090_i0 PRJNA812001 12336 453 1.536842 6.96189426 Mollicutes 31969 Bacteria Bacteria 826 0   NTclustered gi|1720621726|gb|CP035041.1| 2100 g12090 i0 99.558 100.82119205298 453 2 100 0 1 453 427700 428152 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 45672 826 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
20350752 20350752 PRJNA812001_P_NODE_37256_length_316_cov_1.267490_g37010_i0 PRJNA812001 37256 316 1.26749 4.0052684 Metamycoplasmataceae 2895623 Bacteria Bacteria 584 2.359999999999999e-162   NTclustered gi|1563790229|emb|LR214963.1| 2115 g37010 i0 100 169.069620253165 316 0 100 0 1 316 194610 194925 Mycoplasma fermentans strain NCTC10117 genome assembly, plasmid: 9 blastn 53426 584 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mycoplasmopsis Mycoplasmopsis fermentans

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;