RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA812001", tax_clade = "PVC group" and tax_phylum = "Chlamydiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Chlamydiota · 2 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 2 ✖

bioproject 1

  • PRJNA812001 · 2 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5913753 5913753 PRJNA812001_P_NODE_136425_length_232_cov_2.817610_g136179_i0 PRJNA812001 136425 232 2.81761 6.5368552 Candidatus Rubidus massiliensis 1444712 Bacteria Bacteria 148 1.49e-41   NR CDZ80364.1 1444712 g136179 i0 92.4 1.02155172413793 79 4 99.6 1 1 231 248 326 CDZ80364.1 Inosine-5'-monophosphate dehydrogenase [Candidatus Rubidus massiliensis] diamond 237 148 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Chlamydiales Chlamydiaceae Candidatus Rubidus Candidatus Rubidus massiliensis
25037404 25037404 PRJNA812001_P_NODE_77800_length_251_cov_1.814607_g77554_i0 PRJNA812001 77800 251 1.814607 4.55466357 uncultured Parachlamydiaceae bacterium 464461 Bacteria Bacteria 324 4.37e-84   NTclustered gi|2874253811|emb|OY969795.1| 464461 g77554 i0 92.511 107.310756972112 227 15 90 2 1 225 655351 655125 MAG: uncultured Parachlamydiaceae bacterium isolate MFD05502.bin.c.3 genome assembly, chromosome: 1 blastn 26935 324 1 Bacteria PVC group Pseudomonadati Chlamydiota Chlamydiia Parachlamydiales Parachlamydiaceae   uncultured Parachlamydiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;