RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

3 rows where bioproject = "PRJNA812001", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA812001 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28854170 28854170 PRJNA812001_P_NODE_23268_length_361_cov_6.694444_g23022_i0 PRJNA812001 23268 361 6.694444 24.16694284 Longimicrobiales bacterium 2910168 Bacteria Bacteria 47.8 0.00219   NR HSJ15095.1 2910168 g23022 i0 42.9 0.523545706371191 63 36 52.4 0 116 304 217 279 HSJ15095.1 tetratricopeptide repeat protein [Longimicrobiales bacterium] diamond 189 47.8 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales     Longimicrobiales bacterium
29959469 29959469 PRJNA812001_P_NODE_60551_length_274_cov_2.552239_g60305_i0 PRJNA812001 60551 274 2.552239 6.99313486 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 43.5 0.0295   NR HXM37974.1 2448054 g60305 i0 46.9 0.536496350364963 49 26 53.6 0 265 119 436 484 HXM37974.1 hypothetical protein [Gemmatimonadales bacterium] diamond 147 43.5 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium
31065571 31065571 PRJNA812001_P_NODE_122135_length_243_cov_0.905882_g121889_i0 PRJNA812001 122135 243 0.905882 2.20129326 Gemmatimonadales bacterium 2448054 Bacteria Bacteria 168 2.2299999999999996e-47   NR HEX5574931.1 2448054 g121889 i0 95.1 20 81 4 100 0 1 243 349 429 HEX5574931.1 hypothetical protein [Gemmatimonadales bacterium] diamond 4860 168 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales     Gemmatimonadales bacterium

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;