RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA812001", tax_clade = "Amoebozoa" and tax_phylum = "Tubulinea"

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tax_superkingdom 1

tax_phylum 1

  • Tubulinea · 3 ✖

tax_clade 1

  • Amoebozoa · 3 ✖

bioproject 1

  • PRJNA812001 · 3 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
810493 810493 PRJNA812001_P_NODE_19641_length_381_cov_14.068182_g19395_i0 PRJNA812001 19641 381 14.068182 53.59977342 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 134 1.26e-26   NTclustered gi|89357437|gb|DQ407656.1| 5778 g19395 i0 94.253 0.228346456692913 87 5 23 0 24 110 325 411 Hartmannella vermiformis chitinase-like protein cluster A mRNA, partial cds blastn 87 134 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis
3361259 3361259 PRJNA812001_P_NODE_136703_length_229_cov_6.108974_g136457_i0 PRJNA812001 136703 229 6.108974 13.98955046 Tubulinea sp. 4388 1216001 Tubulinea other_Eukaryota 161 3.25e-35   NTclustered gi|399764265|gb|JQ271776.1| 1216001 g136457 i0 95.098 4.89519650655022 102 5 45 0 128 229 808 909 Tubulinea sp. 4388 18S ribosomal RNA gene, partial sequence blastn 1121 161 1 Eukaryota Amoebozoa   Tubulinea         Tubulinea sp. 4388
17388689 17388689 PRJNA812001_P_NODE_137534_length_215_cov_71.422535_g137288_i0 PRJNA812001 137534 215 71.422535 153.55845025 Vermamoeba vermiformis 5778 Tubulinea other_Eukaryota 198 2.3e-46   NTclustered gi|909719647|gb|KT185627.1| 5778 g137288 i0 83.636 5.11627906976744 220 27 100 5 1 215 51222 51437 Vermamoeba vermiformis isolate BCP-EM3VF21-2 mitochondrion, complete genome blastn 1100 198 1 Eukaryota Amoebozoa   Tubulinea Echinamoebida     Vermamoeba Vermamoeba vermiformis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;