RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

5 rows where bioproject = "PRJNA812001", tax_clade = "Amoebozoa" and tax_phylum = "Discosea"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Discosea · 5 ✖

tax_clade 1

  • Amoebozoa · 5 ✖

bioproject 1

  • PRJNA812001 · 5 ✖

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5914178 5914178 PRJNA812001_P_NODE_5045_length_688_cov_10.222764_g4809_i0 PRJNA812001 5045 688 10.222764 70.33261632 Cochliopodium minus 313997 Discosea other_Eukaryota 976 0   NTclustered gi|330902862|gb|JF298257.1| 313997 g4809 i0 95.2 46.0813953488372 625 17 90 10 1 620 620 4 Cochliopodium minus 18S ribosomal RNA gene, partial sequence blastn 31704 976 1 Eukaryota Amoebozoa   Discosea   Himatismenida Cochliopodiidae Cochliopodium Cochliopodium minus
8464105 8464105 PRJNA812001_P_NODE_9247_length_514_cov_4.900227_g9001_i0 PRJNA812001 9247 514 4.900227 25.18716678 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 279 7.82e-86   NR XP_004337289.1 1257118 g9001 i0 82.8 0.95136186770428 163 27 95.1 1 2 490 678 839 XP_004337289.1 eukaryotic translation elongation factor 2, putative [Acanthamoeba castellanii str. Neff] diamond 489 279 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
16112851 16112851 PRJNA812001_P_NODE_14313_length_426_cov_20.651558_g14067_i0 PRJNA812001 14313 426 20.651558 87.97563708 root 1 Root_unresolved Root_unresolved 122 5.969999999999998e-32   NR NP_042560.1 5755 g14067 i0 51.2 6.16901408450704 127 59 88.7 3 48 425 40 164 NP_042560.1 NADH dehydrogenasesubunit 9 [Acanthamoeba castellanii] diamond 2628 122 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
28822480 28822480 PRJNA812001_P_NODE_55448_length_281_cov_14.730769_g55202_i0 PRJNA812001 55448 281 14.730769 41.39346089 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 72.8 8.1e-15   NR XP_004344905.1 1257118 g55202 i0 66.7 1.15302491103203 54 18 57.7 0 24 185 2 55 XP_004344905.1 uncharacterized protein ACA1_284100 [Acanthamoeba castellanii str. Neff] diamond 324 72.8 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii
29738141 29738141 PRJNA812001_P_NODE_15870_length_410_cov_27.534125_g15624_i0 PRJNA812001 15870 410 27.534125 112.8899125 Acanthamoeba castellanii str. Neff 1257118 Discosea other_Eukaryota 93.6 4.26e-22   NR XP_004338589.1 1257118 g15624 i0 60.8 0.541463414634146 74 28 53.4 1 368 150 1 74 XP_004338589.1 small conserved protein [Acanthamoeba castellanii str. Neff] diamond 222 93.6 1 Eukaryota Amoebozoa   Discosea   Longamoebia Acanthamoebidae Acanthamoeba Acanthamoeba castellanii

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;