RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA811725", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermomicrobiota"

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tax_superkingdom 1

tax_phylum 1

  • Thermomicrobiota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA811725 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26927702 26927702 PRJNA811725_P_NODE_24422_length_310_cov_2.662447_g24176_i0 PRJNA811725 24422 310 2.662447 8.2535857 Thermomicrobiales bacterium 2482790 Bacteria Bacteria 64.7 1.54e-9   NR MCO5217603.1 2482790 g24176 i0 69.4 0.474193548387097 49 15 47.4 0 5 151 401 449 MCO5217603.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [Thermomicrobiales bacterium] diamond 147 64.7 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Thermomicrobiales     Thermomicrobiales bacterium
29706400 29706400 PRJNA811725_P_NODE_27990_length_292_cov_2.602740_g27744_i0 PRJNA811725 27990 292 2.60274 7.6000008 Thermomicrobiales bacterium 2482790 Bacteria Bacteria 122 2.3099999999999997e-31   NR HYJ12552.1 2482790 g27744 i0 68.8 0.986301369863014 96 11 79.1 1 1 231 248 343 HYJ12552.1 threonine/serine dehydratase [Thermomicrobiales bacterium] diamond 288 122 1 Bacteria   Pseudomonadati Thermomicrobiota Thermomicrobia Thermomicrobiales     Thermomicrobiales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;