RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA811725", tax_kingdom = "Pseudomonadati" and tax_phylum = "Myxococcota"

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tax_superkingdom 1

tax_phylum 1

  • Myxococcota · 2 ✖

tax_kingdom 1

  • Pseudomonadati · 2 ✖

bioproject 1

  • PRJNA811725 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29179044 29179044 PRJNA811725_P_NODE_3249_length_774_cov_25.683310_g3042_i0 PRJNA811725 3249 774 25.68331 198.7888194 Myxococcales 29 Bacteria Bacteria 377 2.1899999999999994e-126   NR WP_204222672.1 83451 g3042 i0 68.5 13.9341085271318 257 81 99.6 0 773 3 200 456 WP_204222672.1 aldehyde dehydrogenase [Archangium violaceum] diamond 10785 380 0.992105263157895 Bacteria   Pseudomonadati Myxococcota Myxococcia Myxococcales Archangiaceae Archangium Archangium violaceum
31254899 31254899 PRJNA811725_P_NODE_13415_length_409_cov_2.151786_g13171_i0 PRJNA811725 13415 409 2.151786 8.80080474 Polyangiaceae bacterium 2268199 Bacteria Bacteria 134 7.85e-34   NR NOU34243.1 2268199 g13171 i0 52.6 0.990220048899755 135 62 99 1 407 3 408 540 NOU34243.1 TSUP family transporter [Polyangiaceae bacterium] diamond 405 134 1 Bacteria   Pseudomonadati Myxococcota   Polyangiales Polyangiaceae   Polyangiaceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;