RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA811725", tax_kingdom = "Pseudomonadati" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA811725 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5913349 5913349 PRJNA811725_P_NODE_26345_length_299_cov_3.075221_g26099_i0 PRJNA811725 26345 299 3.075221 9.19491079 Campylobacter concisus 199 Bacteria Bacteria 464 3.0099999999999996e-126   NTclustered gi|1938719709|gb|CP049264.1| 199 g26099 i0 94.006 19.0234113712375 317 1 100 4 1 299 246033 245717 Campylobacter concisus strain P11CDO-S1 chromosome, complete genome blastn 5688 464 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter concisus
23762508 23762508 PRJNA811725_P_NODE_23979_length_310_cov_3.721519_g23733_i0 PRJNA811725 23979 310 3.721519 11.5367089 Arcobacter suis 1278212 Bacteria Bacteria 449 8.790000000000001e-122   NTclustered gi|1474790806|gb|CP032100.1| 663365 g23733 i0 92.903 34.658064516129 310 15 100 1 1 310 745515 745817 Arcobacter suis CECT 7833 chromosome, complete genome blastn 10744 449 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Arcobacteraceae Arcobacter Arcobacter suis
32299245 32299245 PRJNA811725_P_NODE_36199_length_251_cov_0.865169_g35953_i0 PRJNA811725 36199 251 0.865169 2.17157419 uncultured Campylobacter sp. 218934 Bacteria Bacteria 185 5.280000000000001e-59   NR WP_297989719.1 218934 g35953 i0 100 0.99203187250996006 83 0 99.2 0 251 3 23 105 WP_297989719.1 hypothetical protein [uncultured Campylobacter sp.] diamond 249 185 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter uncultured Campylobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;