RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA811725", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 4 ✖

tax_kingdom 1

  • Bacillati · 4 ✖

bioproject 1

  • PRJNA811725 · 4 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2499621 2499621 PRJNA811725_P_NODE_39642_length_245_cov_0.895349_g39396_i0 PRJNA811725 39642 245 0.895349 2.19360505 Mesomycoplasma 2923352 Bacteria Bacteria 446 8.68e-121   NTclustered gi|2713084492|gb|CP150431.1| 2100 g39396 i0 99.592 17.4938775510204 245 0 99 1 1 244 76212 75968 Mesomycoplasma hyorhinis strain Nahrain chromosome blastn 4286 446 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
3775893 3775893 PRJNA811725_P_NODE_31243_length_279_cov_1.383495_g30997_i0 PRJNA811725 31243 279 1.383495 3.85995105 Mesomycoplasma 2923352 Bacteria Bacteria 516 7.58e-142   NTclustered gi|2713084492|gb|CP150431.1| 2100 g30997 i0 100 15 279 0 100 0 1 279 672303 672025 Mesomycoplasma hyorhinis strain Nahrain chromosome blastn 4185 516 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
20350286 20350286 PRJNA811725_P_NODE_2276_length_896_cov_1.981774_g2102_i0 PRJNA811725 2276 896 1.981774 17.75669504 Mesomycoplasma 2923352 Bacteria Bacteria 1650 0   NTclustered gi|1563681465|emb|LR214949.1| 2100 g2102 i0 99.888 16.3426339285714 896 1 100 0 1 896 648222 647327 Mycoplasma hyorhinis strain NCTC10121 genome assembly, plasmid: 3 blastn 14643 1650 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis
20350302 20350302 PRJNA811725_P_NODE_23716_length_311_cov_0.970588_g23470_i0 PRJNA811725 23716 311 0.970588 3.01852868 Bacteria 2 Bacteria Bacteria 575 1.3899999999999995e-159   NTclustered gi|1720621726|gb|CP035041.1| 2100 g23470 i0 100 97.4630225080386 311 0 100 0 1 311 428745 429055 Mesomycoplasma hyorhinis strain JF5820 chromosome, complete genome blastn 30311 575 1 Bacteria   Bacillati Mycoplasmatota   Mycoplasmoidales Metamycoplasmataceae Mesomycoplasma Mesomycoplasma hyorhinis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;