RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA811725", tax_clade = "PVC group" and tax_phylum = "Verrucomicrobiota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Verrucomicrobiota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA811725 · 3 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
11013854 11013854 PRJNA811725_P_NODE_23989_length_310_cov_3.691983_g23743_i0 PRJNA811725 23989 310 3.691983 11.4451473 Luteolibacter sp. SL250 2995170 Bacteria Bacteria 106 2.19e-18   NTclustered gi|2381117106|gb|CP113054.1| 2995170 g23743 i0 79.333 0.483870967741935 150 31 48 0 1 150 563494 563345 Luteolibacter sp. SL250 chromosome blastn 150 106 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp. SL250
23762525 23762525 PRJNA811725_P_NODE_26239_length_299_cov_3.725664_g25993_i0 PRJNA811725 26239 299 3.725664 11.13973536 Luteolibacter 518753 Bacteria Bacteria 102 4.429999999999999e-23   NR MEO8616039.1 1962973 g25993 i0 91.8 6.88294314381271 49 4 49.2 0 148 2 75 123 MEO8616039.1 thymidine phosphorylase [Luteolibacter sp.] diamond 2058 103 0.990291262135922 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter sp.
29075542 29075542 PRJNA811725_P_NODE_30088_length_284_cov_1.270142_g29842_i0 PRJNA811725 30088 284 1.270142 3.60720328 Luteolibacter flavescens 1859460 Bacteria Bacteria 142 6e-37   NR WP_264502298.1 1859460 g29842 i0 75.5 2.97887323943662 94 23 99.3 0 2 283 466 559 WP_264502298.1 ATP-binding protein [Luteolibacter flavescens] diamond 846 142 1 Bacteria PVC group Pseudomonadati Verrucomicrobiota Verrucomicrobiia Verrucomicrobiales Verrucomicrobiaceae Luteolibacter Luteolibacter flavescens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;