RNAquarium Metadata Server
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contig_metadata

4 rows where bioproject = "PRJNA811714" and tax_phylum = "Campylobacterota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Campylobacterota · 4 ✖

tax_kingdom 1

bioproject 1

  • PRJNA811714 · 4 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
10152209 10152209 PRJNA811714_P_NODE_16428_length_261_cov_3.702128_g16235_i0 PRJNA811714 16428 261 3.702128 9.66255408 Campylobacter 194 Bacteria Bacteria 472 1.54e-128   NTclustered gi|1622745323|gb|CP012543.1| 203 g16235 i0 99.234 236.885057471264 261 2 100 0 1 261 158210 157950 Campylobacter rectus strain ATCC 33238, complete genome blastn 61827 472 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter rectus
12288913 12288913 PRJNA811714_P_NODE_32110_length_201_cov_5.437500_g31917_i0 PRJNA811714 32110 201 5.4375 10.929375 Campylobacter rectus 203 Bacteria Bacteria 372 1.18e-98   NTclustered gi|1622745323|gb|CP012543.1| 203 g31917 i0 100 234.009950248756 201 0 100 0 1 201 158905 159105 Campylobacter rectus strain ATCC 33238, complete genome blastn 47036 372 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter rectus
19936095 19936095 PRJNA811714_P_NODE_27116_length_227_cov_3.000000_g26923_i0 PRJNA811714 27116 227 3 6.81 Pseudomonadati 3379134 Bacteria Bacteria 137 1.51e-40   NR WP_306199892.1 197 g26923 i0 92.9 1.85022026431718 70 5 92.5 0 1 210 4 73 WP_306199892.1 DUF3467 domain-containing protein, partial [Campylobacter jejuni] diamond 420 138 0.992753623188406 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter jejuni
31611747 31611747 PRJNA811714_P_NODE_28336_length_222_cov_6.201342_g28143_i0 PRJNA811714 28336 222 6.201342 13.76697924 root 1 Root_unresolved Root_unresolved 59.7 4.3e-10   NR GAA8554817.1 210 g28143 i0 74.4 10.3243243243243 39 10 52.7 0 170 54 4 42 GAA8554817.1 hypothetical protein KYTH17_15160 [Helicobacter pylori] diamond 2292 59.7 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Helicobacteraceae Helicobacter Helicobacter pylori

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;