RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

11 rows where bioproject = "PRJNA811714" and tax_phylum = "Basidiomycota"

✎ View and edit SQL

This data as json, CSV (advanced)

analysis 2

tax_superkingdom 1

tax_phylum 1

  • Basidiomycota · 11 ✖

tax_kingdom 1

tax_clade 1

bioproject 1

  • PRJNA811714 · 11 ✖
Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
809237 809237 PRJNA811714_P_NODE_20641_length_245_cov_2.686047_g20448_i0 PRJNA811714 20641 245 2.686047 6.58081515 Cystobasidium laryngis 105772 Fungi Fungi 392 1.15e-104   NTclustered gi|1358186635|gb|MH047192.1| 105772 g20448 i0 95.51 110.90612244898 245 11 100 0 1 245 3903 3659 Cystobasidium laryngis 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 27172 392 1 Eukaryota Opisthokonta Fungi Basidiomycota Cystobasidiomycetes Cystobasidiales Cystobasidiaceae Cystobasidium Cystobasidium laryngis
809569 809569 PRJNA811714_P_NODE_31501_length_204_cov_6.114504_g31308_i0 PRJNA811714 31501 204 6.114504 12.47358816 Leucosporidium scottii 5278 Fungi Fungi 339 1.22e-88   NTclustered gi|1358186634|gb|MH047191.1| 5278 g31308 i0 96.569 70.4313725490196 204 7 100 0 1 204 3919 4122 Leucosporidium scottii 18S ribosomal RNA gene, partial sequence; internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence; and 28S ribosomal RNA gene, partial sequence blastn 14368 339 1 Eukaryota Opisthokonta Fungi Basidiomycota Microbotryomycetes Leucosporidiales Leucosporidiaceae Leucosporidium Leucosporidium scottii
2084997 2084997 PRJNA811714_P_NODE_22722_length_238_cov_8.200000_g22529_i0 PRJNA811714 22722 238 8.2 19.516 Malassezia restricta 76775 Fungi Fungi 433 6.53e-117   NTclustered gi|1546635598|ref|XR_003525370.1| 76775 g22529 i0 99.578 100.033613445378 237 1 99 0 2 238 3213 2977 Malassezia restricta 28S ribosomal RNA (MRET_r0004), rRNA blastn 23808 433 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
7601717 7601717 PRJNA811714_P_NODE_11626_length_289_cov_12.680556_g11433_i0 PRJNA811714 11626 289 12.680556 36.646806840000004 Tremellomycetes 155616 Fungi Fungi 534 2.18e-147   NTclustered gi|1102644133|gb|KY107703.1| 5210 g11433 i0 100 100 289 0 100 0 1 289 627 339 Filobasidium floriforme culture CBS:6241 large subunit ribosomal RNA gene, partial sequence blastn 28900 534 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Filobasidiales Filobasidiaceae Filobasidium Filobasidium floriforme
7601779 7601779 PRJNA811714_P_NODE_28966_length_218_cov_8.668966_g28773_i0 PRJNA811714 28966 218 8.668966 18.89834588 Cryptococcus 5206 Fungi Fungi 202 1.81e-47   NTclustered gi|1338633128|gb|CP025718.1| 5207 g28773 i0 83.871 140.756880733945 217 30 99 5 3 218 271413 271201 Cryptococcus neoformans strain EN28 chromosome 2, complete sequence blastn 30685 202 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Cryptococcaceae Cryptococcus Cryptococcus neoformans
9737486 9737486 PRJNA811714_P_NODE_25108_length_232_cov_2.905660_g24915_i0 PRJNA811714 25108 232 2.90566 6.7411312 Malassezia restricta 76775 Fungi Fungi 429 8.2e-116   NTclustered gi|1546637025|ref|XM_027630155.1| 76775 g24915 i0 100 1 232 0 100 0 1 232 508 739 Malassezia restricta tryptophanyl-tRNA synthetase (MRET_3528), partial mRNA blastn 232 429 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
11427517 11427517 PRJNA811714_P_NODE_30529_length_209_cov_6.794118_g30336_i0 PRJNA811714 30529 209 6.794118 14.19970662 Tremellomycetes 155616 Fungi Fungi 387 4.42e-103   NTclustered gi|406206|dbj|D13460.1|FILSSRD7 5210 g30336 i0 100 99.9904306220096 209 0 100 0 1 209 339 131 Filobasidium floriforme gene for small subunit ribosomal RNA blastn 20898 387 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Filobasidiales Filobasidiaceae Filobasidium Filobasidium floriforme
12703164 12703164 PRJNA811714_P_NODE_15910_length_263_cov_15.994737_g15717_i0 PRJNA811714 15910 263 15.994737 42.06615831 Tremellomycetes 155616 Fungi Fungi 481 2.58e-131   NTclustered gi|1102644133|gb|KY107703.1| 5210 g15717 i0 99.62 100 263 1 100 0 1 263 40 302 Filobasidium floriforme culture CBS:6241 large subunit ribosomal RNA gene, partial sequence blastn 26300 481 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Filobasidiales Filobasidiaceae Filobasidium Filobasidium floriforme
18660879 18660879 PRJNA811714_P_NODE_27615_length_226_cov_3.019608_g27422_i0 PRJNA811714 27615 226 3.019608 6.82431408 Malassezia restricta 76775 Fungi Fungi 407 3.73e-109   NTclustered gi|1546633568|ref|XM_027628444.1| 76775 g27422 i0 99.115 1 226 2 100 0 1 226 2767 2542 Malassezia restricta exportin-T (MRET_1817), partial mRNA blastn 226 407 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia restricta
23762036 23762036 PRJNA811714_P_NODE_27779_length_225_cov_9.809211_g27586_i0 PRJNA811714 27779 225 9.809211 22.07072475 Papiliotrema terrestris 425109 Fungi Fungi 361 2.9299999999999993e-95   NTclustered gi|1758753257|emb|LR697097.1| 425109 g27586 i0 95.556 148.706666666667 225 10 100 0 1 225 2735 2959 Papiliotrema terrestris partial 28S rRNA gene blastn 33459 361 1 Eukaryota Opisthokonta Fungi Basidiomycota Tremellomycetes Tremellales Rhynchogastremaceae Papiliotrema Papiliotrema terrestris
29769836 29769836 PRJNA811714_P_NODE_16491_length_261_cov_2.457447_g16298_i0 PRJNA811714 16491 261 2.457447 6.41393667 Malassezia pachydermatis 77020 Fungi Fungi 159 4.28e-45   NR XP_017990133.1 77020 g16298 i0 86.2 2 87 12 100 0 1 261 194 280 XP_017990133.1 saccharopine dehydrogenase [Malassezia pachydermatis] diamond 522 159 1 Eukaryota Opisthokonta Fungi Basidiomycota Malasseziomycetes Malasseziales Malasseziaceae Malassezia Malassezia pachydermatis

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;