RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA811714", tax_kingdom = "Pseudomonadati" and tax_phylum = "Thermodesulfobacteriota"

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analysis 2

tax_superkingdom 1

tax_phylum 1

  • Thermodesulfobacteriota · 3 ✖

tax_kingdom 1

  • Pseudomonadati · 3 ✖

bioproject 1

  • PRJNA811714 · 3 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
18660673 18660673 PRJNA811714_P_NODE_20635_length_245_cov_2.686047_g20442_i0 PRJNA811714 20635 245 2.686047 6.58081515 Pseudodesulfovibrio indicus 1716143 Bacteria Bacteria 73.1 1.7e-8   NTclustered gi|998152336|gb|CP014206.1| 1716143 g20442 i0 86.765 0.93469387755102 68 5 27 4 10 75 3934290 3934225 Pseudodesulfovibrio indicus strain J2 chromosome, complete genome blastn 229 73.1 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfovibrionia Desulfovibrionales Desulfovibrionaceae Pseudodesulfovibrio Pseudodesulfovibrio indicus
28064962 28064962 PRJNA811714_P_NODE_13125_length_279_cov_2.242718_g12932_i0 PRJNA811714 13125 279 2.242718 6.25718322 Desulfosalsimonadaceae bacterium 3060584 Bacteria Bacteria 43.9 0.0212   NR MFO8112632.1 3060584 g12932 i0 39.7 0.838709677419355 78 41 82.8 3 275 45 304 376 MFO8112632.1 pyruvate kinase [Desulfosalsimonadaceae bacterium] diamond 234 43.9 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales Desulfosalsimonadaceae   Desulfosalsimonadaceae bacterium
30812496 30812496 PRJNA811714_P_NODE_19654_length_248_cov_2.640000_g19461_i0 PRJNA811714 19654 248 2.64 6.5472 Desulfobacterales bacterium 2044940 Bacteria Bacteria 106 2.73e-25   NR MCK7512068.1 2044940 g19461 i0 79.1 0.810483870967742 67 14 81 0 43 243 305 371 MCK7512068.1 integrase domain-containing protein [Desulfobacterales bacterium] diamond 201 106 1 Bacteria   Pseudomonadati Thermodesulfobacteriota Desulfobacteria Desulfobacterales     Desulfobacterales bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;