RNAquarium Metadata Server
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contig_metadata

1 row where bioproject = "PRJNA811714", tax_kingdom = "Pseudomonadati" and tax_phylum = "Deferribacterota"

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tax_superkingdom 1

tax_phylum 1

  • Deferribacterota · 1 ✖

tax_kingdom 1

  • Pseudomonadati · 1 ✖

bioproject 1

  • PRJNA811714 · 1 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
1223661 1223661 PRJNA811714_P_NODE_20821_length_244_cov_2.701754_g20628_i0 PRJNA811714 20821 244 2.701754 6.59227976 Calditerrivibrio nitroreducens 477976 Bacteria Bacteria 155 2.12e-43   NR WP_013450236.1 477976 g20628 i0 98.8 0.983606557377049 80 1 98.4 0 3 242 361 440 WP_013450236.1 replicative DNA helicase [Calditerrivibrio nitroreducens] diamond 240 155 1 Bacteria   Pseudomonadati Deferribacterota Deferribacteres Deferribacterales Calditerrivibrionaceae Calditerrivibrio Calditerrivibrio nitroreducens

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;