RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA811714", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 3 ✖

tax_kingdom 1

  • Bacillati · 3 ✖

bioproject 1

  • PRJNA811714 · 3 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
2499125 2499125 PRJNA811714_P_NODE_11762_length_288_cov_15.027907_g11569_i0 PRJNA811714 11762 288 15.027907 43.28037216 Acholeplasma 2147 Bacteria Bacteria 531 2.81e-146   NTclustered gi|1403529253|emb|LS483439.1| 2148 g11569 i0 100 290.336805555556 287 0 99 0 1 287 75873 76159 Acholeplasma laidlawii strain NCTC10116 genome assembly, chromosome: 1 blastn 83617 531 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma laidlawii
3775580 3775580 PRJNA811714_P_NODE_903_length_853_cov_12.380769_g757_i0 PRJNA811714 903 853 12.380769 105.60795957 Acholeplasma 2147 Bacteria Bacteria 1559 0   NTclustered gi|1403529253|emb|LS483439.1| 2148 g757 i0 99.649 135.125439624853 854 2 100 1 1 853 73766 74619 Acholeplasma laidlawii strain NCTC10116 genome assembly, chromosome: 1 blastn 115262 1559 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma laidlawii
8876749 8876749 PRJNA811714_P_NODE_19527_length_248_cov_7.851429_g19334_i0 PRJNA811714 19527 248 7.851429 19.47154392 Acholeplasma 2147 Bacteria Bacteria 459 1.13e-124   NTclustered gi|1403529253|emb|LS483439.1| 2148 g19334 i0 100 876.983870967742 248 0 100 0 1 248 76346 76593 Acholeplasma laidlawii strain NCTC10116 genome assembly, chromosome: 1 blastn 217492 459 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Acholeplasma Acholeplasma laidlawii

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;