RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA811714", tax_clade = "Sar" and tax_phylum = "Apicomplexa"

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tax_superkingdom 1

tax_phylum 1

  • Apicomplexa · 2 ✖

tax_clade 1

bioproject 1

  • PRJNA811714 · 2 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
5912867 5912867 PRJNA811714_P_NODE_28285_length_222_cov_17.677852_g28092_i0 PRJNA811714 28285 222 17.677852 39.24483144 Plasmodium gallinaceum 5849 SAR_Eukaryotes SAR_Eukaryotes 54.7 0.005   NTclustered gi|1620113398|ref|XM_028675070.1| 5849 g28092 i0 94.444 0.162162162162162 36 0 16 2 114 148 581 615 Plasmodium gallinaceum conserved Plasmodium protein, unknown function (PGAL8A_00152600), partial mRNA blastn 36 54.7 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium gallinaceum
16526422 16526422 PRJNA811714_P_NODE_16853_length_259_cov_4.290323_g16660_i0 PRJNA811714 16853 259 4.290323 11.11193657 Eukaryota 2759 SAR_Eukaryotes SAR_Eukaryotes 479 9.13e-131   NTclustered gi|14495562|gb|L21708.2|PFA34K 5821 g16660 i0 100 99.9382239382239 259 0 100 0 1 259 1012 1270 Plasmodium berghei p23-like protein mRNA, partial cds blastn 25884 479 1 Eukaryota Sar   Apicomplexa Aconoidasida Haemosporida Plasmodiidae Plasmodium Plasmodium berghei

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;