RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA811714", tax_clade = "FCB group" and tax_phylum = "Gemmatimonadota"

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tax_superkingdom 1

tax_phylum 1

  • Gemmatimonadota · 3 ✖

tax_kingdom 1

tax_clade 1

  • FCB group · 3 ✖

bioproject 1

  • PRJNA811714 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
19936117 19936117 PRJNA811714_P_NODE_27616_length_226_cov_3.019608_g27423_i0 PRJNA811714 27616 226 3.019608 6.82431408 Gemmatimonadota bacterium 2026742 Bacteria Bacteria 150 3.82e-40   NR MEE8596102.1 2026742 g27423 i0 98.6 0.982300884955752 74 1 98.2 0 3 224 897 970 MEE8596102.1 amino acid adenylation domain-containing protein [Gemmatimonadota bacterium] diamond 222 150 1 Bacteria FCB group Pseudomonadati Gemmatimonadota         Gemmatimonadota bacterium
29801446 29801446 PRJNA811714_P_NODE_17591_length_256_cov_3.032787_g17398_i0 PRJNA811714 17591 256 3.032787 7.76393472 Roseisolibacter agri 2014610 Bacteria Bacteria 47 0.00138   NR WP_284348802.1 2014610 g17398 i0 50 0.6328125 54 23 63.3 1 62 223 349 398 WP_284348802.1 APC family permease [Roseisolibacter agri] diamond 162 47 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Gemmatimonadia Gemmatimonadales Gemmatimonadaceae Roseisolibacter Roseisolibacter agri
31159716 31159716 PRJNA811714_P_NODE_27395_length_226_cov_6.039216_g27202_i0 PRJNA811714 27395 226 6.039216 13.64862816 Longimicrobium sp. 2029185 Bacteria Bacteria 88.6 2.22e-18   NR HEV3049408.1 2029185 g27202 i0 66.2 0.86283185840708 65 22 86.3 0 14 208 743 807 HEV3049408.1 amino acid adenylation domain-containing protein [Longimicrobium sp.] diamond 195 88.6 1 Bacteria FCB group Pseudomonadati Gemmatimonadota Longimicrobiia Longimicrobiales Longimicrobiaceae Longimicrobium Longimicrobium sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;