RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

contig_metadata

2 rows where bioproject = "PRJNA811237", tax_phylum = "Promethearchaeota" and tax_superkingdom = "Archaea"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_superkingdom 1

  • Archaea · 2 ✖

tax_phylum 1

  • Promethearchaeota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA811237 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
29170184 29170184 PRJNA811237_S_NODE_24309_length_175_cov_1.801587_g24069_i0 PRJNA811237 24309 175 1.801587 3.15277725 Candidatus Harpocratesius repetitus 3049170 Archaea Archaea 43.5 0.00148   NR MCF2140270.1 3049170 g24069 i0 44.2 1.90285714285714 43 24 73.7 0 129 1 4 46 MCF2140270.1 cold-shock protein [Candidatus Harpocratesius repetitus] diamond 333 43.5 1 Archaea   Promethearchaeati Promethearchaeota Promethearchaeia Promethearchaeales Promethearchaeaceae Candidatus Harpocratesius Candidatus Harpocratesius repetitus
29422426 29422426 PRJNA811237_S_NODE_12849_length_222_cov_0.884393_g12609_i0 PRJNA811237 12849 222 0.884393 1.96335246 Promethearchaeota archaeon CR_4 1849166 Archaea Archaea 84.7 3.53e-17   NR OLS15498.1 1849166 g12609 i0 59.5 1 74 30 100 0 222 1 235 308 OLS15498.1 MAG: protein AtoB1 [Promethearchaeota archaeon CR_4] diamond 222 84.7 1 Archaea   Promethearchaeati Promethearchaeota         Promethearchaeota archaeon CR_4

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;