RNAquarium Metadata Server
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contig_metadata

11 rows where bioproject = "PRJNA811237" and tax_phylum = "Parabasalia"

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tax_superkingdom 1

tax_phylum 1

  • Parabasalia · 11 ✖

tax_clade 1

bioproject 1

  • PRJNA811237 · 11 ✖

analysis 1

tax_kingdom 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
26674073 26674073 PRJNA811237_S_NODE_32001_length_164_cov_0.878261_g31761_i0 PRJNA811237 32001 164 0.878261 1.44034804 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 46.2 7.68e-4   NR XP_068361374.1 1144522 g31761 i0 52.1 1.73780487804878 48 20 87.8 1 150 7 256 300 XP_068361374.1 Clan SB, family S8 [Tritrichomonas foetus] diamond 285 46.2 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
26959141 26959141 PRJNA811237_S_NODE_23802_length_177_cov_1.195312_g23562_i0 PRJNA811237 23802 177 1.195312 2.11570224 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 69.7 2.48e-12   NR XP_068347948.1 1144522 g23562 i0 50.8 3 59 29 100 0 177 1 75 133 XP_068347948.1 NAD-dependent protein deacetylase sirtuin-2 [Tritrichomonas foetus] diamond 531 69.7 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
27094661 27094661 PRJNA811237_S_NODE_13362_length_219_cov_0.900000_g13122_i0 PRJNA811237 13362 219 0.9 1.971 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 65.5 6.35e-11   NR XP_001579147.1 412133 g13122 i0 43.5 12.4246575342466 69 38 93.2 1 217 14 94 162 XP_001579147.1 regulation of endocytosis [Trichomonas vaginalis G3] diamond 2721 65.5 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27220833 27220833 PRJNA811237_S_NODE_16062_length_205_cov_1.307692_g15822_i0 PRJNA811237 16062 205 1.307692 2.6807686 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 45.4 0.00252   NR XP_001323344.1 412133 g15822 i0 43.6 3.20487804878049 55 29 80.5 1 41 205 238 290 XP_001323344.1 STKc CK1 domain-containing protein [Trichomonas vaginalis G3] diamond 657 45.4 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27307260 27307260 PRJNA811237_S_NODE_14303_length_213_cov_1.676829_g14063_i0 PRJNA811237 14303 213 1.676829 3.57164577 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 114 1.74e-30   NR XP_001313641.1 412133 g14063 i0 70 1.98591549295775 70 21 98.6 0 4 213 46 115 XP_001313641.1 histone ubiquitination [Trichomonas vaginalis G3] diamond 423 114 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
27695182 27695182 PRJNA811237_S_NODE_23724_length_177_cov_1.414062_g23484_i0 PRJNA811237 23724 177 1.414062 2.50288974 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 43.1 0.0032   NR XP_001314726.1 412133 g23484 i0 53.3 2.4406779661017 30 14 50.8 0 111 22 51 80 XP_001314726.1 positive regulation of ATP-dependent microtubule motor activity, plus-end-directed [Trichomonas vaginalis G3] diamond 432 43.5 0.990804597701149 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis
28137094 28137094 PRJNA811237_S_NODE_7665_length_270_cov_1.384615_g7425_i0 PRJNA811237 7665 270 1.384615 3.7384605 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 106 3.27e-25   NR XP_067777364.1 135588 g7425 i0 51.7 12.4444444444444 87 41 95.6 1 265 8 214 300 XP_067777364.1 AGC family protein kinase [Histomonas meleagridis] diamond 3360 106 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Dientamoebidae Histomonas Histomonas meleagridis
29706396 29706396 PRJNA811237_S_NODE_8950_length_254_cov_1.400000_g8710_i0 PRJNA811237 8950 254 1.4 3.556 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 54.3 3.43e-6   NR XP_068350449.1 1144522 g8710 i0 32.9 1.54724409448819 70 47 82.7 0 221 12 99 168 XP_068350449.1 Pumilio-family RNA binding repeat containing protein [Tritrichomonas foetus] diamond 393 54.3 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30157616 30157616 PRJNA811237_S_NODE_11712_length_229_cov_1.133333_g11472_i0 PRJNA811237 11712 229 1.133333 2.59533257 Eukaryota 2759 unresolved_Eukaryota other_Eukaryota 43.1 0.021   NR XP_068365971.1 1144522 g11472 i0 34.7 2.12227074235808 49 32 64.2 0 228 82 83 131 XP_068365971.1 Leucine Rich Repeat family protein [Tritrichomonas foetus] diamond 486 43.1 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
30907521 30907521 PRJNA811237_S_NODE_1694_length_557_cov_18.210630_g1455_i0 PRJNA811237 1694 557 18.21063 101.4332091 Tritrichomonas foetus 1144522 Parabasalia other_Eukaryota 199 1.34e-61   NR XP_068360038.1 1144522 g1455 i0 57.2 7.49730700179533 173 74 93.2 0 533 15 5 177 XP_068360038.1 40S ribosomal protein S9-1 [Tritrichomonas foetus] diamond 4176 199 1 Eukaryota Metamonada   Parabasalia   Tritrichomonadida Tritrichomonadidae Tritrichomonas Tritrichomonas foetus
31792431 31792431 PRJNA811237_S_NODE_4117_length_358_cov_2.071197_g3877_i0 PRJNA811237 4117 358 2.071197 7.41488526 Trichomonas vaginalis G3 412133 Parabasalia other_Eukaryota 84.3 3.27e-16   NR XP_001307808.1 412133 g3877 i0 42.5 0.888268156424581 106 61 88.8 0 357 40 368 473 XP_001307808.1 Clan MH, family M20, peptidase T-like metallopeptidase dapE [Trichomonas vaginalis G3] diamond 318 84.3 1 Eukaryota Metamonada   Parabasalia   Trichomonadida Trichomonadidae Trichomonas Trichomonas vaginalis

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;