RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA811237", tax_kingdom = "Fusobacteriati" and tax_superkingdom = "Bacteria"

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tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

tax_kingdom 1

  • Fusobacteriati · 2 ✖

bioproject 1

  • PRJNA811237 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
28073678 28073678 PRJNA811237_S_NODE_19285_length_192_cov_1.195804_g19045_i0 PRJNA811237 19285 192 1.195804 2.29594368 Bacteria 2 Bacteria Bacteria 89.7 1.12e-20   NR WP_294703558.1 159267 g19045 i0 60.9 3 64 25 100 0 192 1 99 162 WP_294703558.1 hypoxanthine phosphoribosyltransferase [uncultured Fusobacterium sp.] diamond 576 90.5 0.991160220994475 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Fusobacterium uncultured Fusobacterium sp.
29201745 29201745 PRJNA811237_S_NODE_12169_length_226_cov_1.152542_g11929_i0 PRJNA811237 12169 226 1.152542 2.60474492 Ilyobacter sp. 3100343 Bacteria Bacteria 44.3 0.00497   NR WP_372712900.1 3100343 g11929 i0 39.6 0.63716814159292 48 29 63.7 0 208 65 32 79 WP_372712900.1 Crp/Fnr family transcriptional regulator [Ilyobacter sp.] diamond 144 44.3 1 Bacteria   Fusobacteriati Fusobacteriota Fusobacteriia Fusobacteriales Fusobacteriaceae Ilyobacter Ilyobacter sp.

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;