RNAquarium Metadata Server
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contig_metadata

3 rows where bioproject = "PRJNA811237", tax_clade = "PVC group" and tax_phylum = "Lentisphaerota"

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tax_superkingdom 1

tax_phylum 1

  • Lentisphaerota · 3 ✖

tax_kingdom 1

tax_clade 1

  • PVC group · 3 ✖

bioproject 1

  • PRJNA811237 · 3 ✖

analysis 1

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
27875416 27875416 PRJNA811237_S_NODE_19685_length_190_cov_2.113475_g19445_i0 PRJNA811237 19685 190 2.113475 4.0156025 Lentisphaeria bacterium 2053569 Bacteria Bacteria 65.5 4.86e-11   NR MBR2631953.1 2053569 g19445 i0 54.1 3.9 61 26 93.2 2 13 189 34 94 MBR2631953.1 redoxin family protein [Lentisphaeria bacterium] diamond 741 65.5 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria       Lentisphaeria bacterium
29517237 29517237 PRJNA811237_S_NODE_21710_length_183_cov_2.097015_g21470_i0 PRJNA811237 21710 183 2.097015 3.83753745 Victivallaceae bacterium 2793042 Bacteria Bacteria 58.2 5.96e-8   NR MDD4816469.1 2793042 g21470 i0 53.2 2.32786885245902 47 22 77 0 181 41 590 636 MDD4816469.1 hypothetical protein [Victivallaceae bacterium] diamond 426 58.2 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Victivallales Victivallaceae   Victivallaceae bacterium
30654436 30654436 PRJNA811237_S_NODE_24013_length_176_cov_1.582677_g23773_i0 PRJNA811237 24013 176 1.582677 2.78551152 Lentisphaeraceae bacterium 2461380 Bacteria Bacteria 72 4.9e-13   NR NQZ58237.1 2461380 g23773 i0 62.1 1.97727272727273 58 20 98.9 1 2 175 40 95 NQZ58237.1 transaldolase [Lentisphaeraceae bacterium] diamond 348 72 1 Bacteria PVC group Pseudomonadati Lentisphaerota Lentisphaeria Lentisphaerales Lentisphaeraceae   Lentisphaeraceae bacterium

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;