RNAquarium Metadata Server
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contig_metadata

6 rows where bioproject = "PRJNA807836" and tax_phylum = "Kitrinoviricota"

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tax_superkingdom 1

tax_phylum 1

  • Kitrinoviricota · 6 ✖

tax_kingdom 1

bioproject 1

  • PRJNA807836 · 6 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
3358203 3358203 PRJNA807836_S_NODE_3_length_3710_cov_4.651361_g2_i0 PRJNA807836 3 3710 4.651361 172.5654931 Carlavirus hydrangeae 3427759 Viruses Viruses 6259 0   NTclustered gi|242346753|ref|NC_012869.1| 375546 g2 i0 97.116 4.58787061994609 3710 107 100 0 1 3710 3066 6775 Hydrangea chlorotic mottle virus, complete genome blastn 17021 6259 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus hydrangeae
4635638 4635638 PRJNA807836_S_NODE_2804_length_1029_cov_2.810669_g2632_i0 PRJNA807836 2804 1029 2.810669 28.92178401 Carlavirus hydrangeae 3427759 Viruses Viruses 1751 0   NTclustered gi|242346753|ref|NC_012869.1| 375546 g2632 i0 97.376 3.53061224489796 1029 27 100 0 1 1029 1328 300 Hydrangea chlorotic mottle virus, complete genome blastn 3633 1751 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus hydrangeae
7185263 7185263 PRJNA807836_S_NODE_19266_length_312_cov_6.677824_g18990_i0 PRJNA807836 19266 312 6.677824 20.83481088 Carlavirus hydrangeae 3427759 Viruses Viruses 544 3.95e-150   NTclustered gi|242346753|ref|NC_012869.1| 375546 g18990 i0 99.01 2.91346153846154 303 3 97 0 4 306 324 22 Hydrangea chlorotic mottle virus, complete genome blastn 909 544 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus hydrangeae
7185671 7185671 PRJNA807836_S_NODE_726_length_1703_cov_5.276687_g672_i0 PRJNA807836 726 1703 5.276687 89.86197961 Carlavirus hydrangeae 3427759 Viruses Viruses 3070 0   NTclustered gi|90592291|gb|DQ412999.1| 375546 g672 i0 99.235 5.11802701115678 1699 11 99 2 6 1703 1752 55 Hydrangea chlorotic mottle virus 12 kDa protein (TGB2) gene, partial cds; and triple gene block protein 3, coat protein (CP), and putative nucleic acid-binding protein genes, complete cds blastn 8716 3070 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus hydrangeae
12286782 12286782 PRJNA807836_S_NODE_6850_length_617_cov_2.283088_g6590_i0 PRJNA807836 6850 617 2.283088 14.08665296 Carlavirus hydrangeae 3427759 Viruses Viruses 1026 0   NTclustered gi|242346753|ref|NC_012869.1| 375546 g6590 i0 96.748 2.9902755267423 615 20 99 0 3 617 1927 1313 Hydrangea chlorotic mottle virus, complete genome blastn 1845 1026 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus hydrangeae
13560672 13560672 PRJNA807836_S_NODE_1931_length_1221_cov_3.479094_g1806_i0 PRJNA807836 1931 1221 3.479094 42.47973774 Carlavirus hydrangeae 3427759 Viruses Viruses 2006 0   NTclustered gi|242346753|ref|NC_012869.1| 375546 g1806 i0 96.318 3.001638001638 1222 43 100 2 1 1221 3111 1891 Hydrangea chlorotic mottle virus, complete genome blastn 3665 2006 1 Viruses   Orthornavirae Kitrinoviricota Alsuviricetes Tymovirales Betaflexiviridae Carlavirus Carlavirus hydrangeae

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;