RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA807836", tax_phylum = "Campylobacterota" and tax_superkingdom = "Bacteria"

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analysis 2

tax_superkingdom 1

  • Bacteria · 2 ✖

tax_phylum 1

  • Campylobacterota · 2 ✖

tax_kingdom 1

bioproject 1

  • PRJNA807836 · 2 ✖

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
4635660 4635660 PRJNA807836_S_NODE_29184_length_246_cov_0.890173_g28908_i0 PRJNA807836 29184 246 0.890173 2.18982558 Campylobacter ureolyticus 827 Bacteria Bacteria 427 3.16e-115   NTclustered gi|1966876394|gb|CP068487.1| 827 g28908 i0 97.967 5 246 5 100 0 1 246 767914 767669 Campylobacter ureolyticus strain FDAARGOS_1102 chromosome blastn 1230 427 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter ureolyticus
32362374 32362374 PRJNA807836_S_NODE_30579_length_242_cov_1.236686_g30303_i0 PRJNA807836 30579 242 1.236686 2.99278012 Campylobacter sp. GTC17 205 Bacteria Bacteria 42.4 0.0471   NR BFV51475.1 3382266 g30303 i0 32.3 0.768595041322314 62 41 76.9 1 200 15 213 273 BFV51475.1 M23 family metallopeptidase [Campylobacter sp. GTC17093] diamond 186 42.4 1 Bacteria   Pseudomonadati Campylobacterota Epsilonproteobacteria Campylobacterales Campylobacteraceae Campylobacter Campylobacter sp. GTC17093

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;