RNAquarium Metadata Server
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contig_metadata

2 rows where bioproject = "PRJNA807836", tax_kingdom = "Bacillati" and tax_phylum = "Mycoplasmatota"

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tax_superkingdom 1

tax_phylum 1

  • Mycoplasmatota · 2 ✖

tax_kingdom 1

  • Bacillati · 2 ✖

bioproject 1

  • PRJNA807836 · 2 ✖

analysis 1

tax_clade 0

Link rowid ▼ query bioproject node length coverage rel_abundance taxname_lca taxid_lca taxoncategory taxoncategorysimple bits evalue lowcoverage_flag analysis_used target taxid gene allele pident sumperc_cov alnlen mismatch qcov gapopen qstart qend tstart tend target_title analysis sumalnlen maxbits bits_percmax tax_superkingdom tax_clade tax_kingdom tax_phylum tax_class tax_order tax_family tax_genus tax_species
6326971 6326971 PRJNA807836_S_NODE_26645_length_255_cov_1.263736_g26369_i0 PRJNA807836 26645 255 1.263736 3.2225268 Candidatus Phytoplasma australasiaticum 2754999 Bacteria Bacteria 125 3.4799999999999993e-31   NR MDV3176183.1 101513 g26369 i0 67.5 0.941176470588235 80 26 94.1 0 241 2 1577 1656 MDV3176183.1 reverse transcriptase domain-containing protein [Candidatus Phytoplasma australasiaticum subsp. ipomoeae] diamond 240 125 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australasiaticum
29359533 29359533 PRJNA807836_S_NODE_10089_length_475_cov_1.149254_g9813_i0 PRJNA807836 10089 475 1.149254 5.4589565 Candidatus Phytoplasma australasiaticum 2754999 Bacteria Bacteria 121 1.9299999999999999e-28   NR MDV3176183.1 101513 g9813 i0 49.1 0.694736842105263 110 56 69.5 0 472 143 1730 1839 MDV3176183.1 reverse transcriptase domain-containing protein [Candidatus Phytoplasma australasiaticum subsp. ipomoeae] diamond 330 121 1 Bacteria   Bacillati Mycoplasmatota Mollicutes Acholeplasmatales Acholeplasmataceae Candidatus Phytoplasma Candidatus Phytoplasma australasiaticum

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CREATE TABLE contig_metadata(query VARCHAR, bioproject VARCHAR, node VARCHAR, length VARCHAR, coverage VARCHAR, rel_abundance VARCHAR, taxname_lca VARCHAR, taxid_lca VARCHAR, taxoncategory VARCHAR, taxoncategorysimple VARCHAR, bits VARCHAR, evalue VARCHAR, lowcoverage_flag VARCHAR, analysis_used VARCHAR, "target" VARCHAR, taxid VARCHAR, gene VARCHAR, allele VARCHAR, pident VARCHAR, sumperc_cov VARCHAR, alnlen VARCHAR, mismatch VARCHAR, qcov VARCHAR, gapopen VARCHAR, qstart VARCHAR, qend VARCHAR, tstart VARCHAR, tend VARCHAR, target_title VARCHAR, analysis VARCHAR, sumalnlen VARCHAR, maxbits VARCHAR, bits_percmax VARCHAR, tax_superkingdom VARCHAR, tax_clade VARCHAR, tax_kingdom VARCHAR, tax_phylum VARCHAR, tax_class VARCHAR, tax_order VARCHAR, tax_family VARCHAR, tax_genus VARCHAR, tax_species VARCHAR);;